Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC28BQ9BUN5 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 AC016027.1-202ENST00000607927 1699 ntBASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 AP002383.4-201ENST00000442518 975 ntBASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 CYP2A7P1-201ENST00000595391 815 ntBASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 AC064862.7-201ENST00000604520 867 ntBASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 AL139424.1-201ENST00000607572 797 ntBASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
CCDC28BQ9BUN5 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 AC005332.1-201ENST00000577698 1310 ntBASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 AC092329.2-201ENST00000598402 547 ntBASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 AC020765.3-201ENST00000613051 740 ntBASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 PGM5P2-202ENST00000637225 1043 ntBASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 AC023157.3-201ENST00000619086 2088 ntBASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28BQ9BUN5 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms