Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 POM121L10P-201ENST00000436994 1285 ntBASIC16.9■□□□□ 0.3
CDX2Q99626 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.9■□□□□ 0.3
CDX2Q99626 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.9■□□□□ 0.3
CDX2Q99626 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.9■□□□□ 0.3
CDX2Q99626 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.9■□□□□ 0.3
CDX2Q99626 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.9■□□□□ 0.3
CDX2Q99626 AL133499.1-201ENST00000596207 608 ntBASIC16.9■□□□□ 0.3
CDX2Q99626 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.9■□□□□ 0.3
CDX2Q99626 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
CDX2Q99626 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.9■□□□□ 0.3
CDX2Q99626 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CDX2Q99626 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CDX2Q99626 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CDX2Q99626 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
CDX2Q99626 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CDX2Q99626 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CDX2Q99626 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.89■□□□□ 0.29
CDX2Q99626 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.89■□□□□ 0.29
CDX2Q99626 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.89■□□□□ 0.29
CDX2Q99626 ACKR1-201ENST00000368121 1240 ntBASIC16.89■□□□□ 0.29
CDX2Q99626 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 MIR1202-201ENST00000408529 83 ntBASIC16.89■□□□□ 0.29
CDX2Q99626 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.89■□□□□ 0.29
CDX2Q99626 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.89■□□□□ 0.29
CDX2Q99626 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.89■□□□□ 0.29
CDX2Q99626 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC16.89■□□□□ 0.29
CDX2Q99626 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.89■□□□□ 0.29
CDX2Q99626 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC16.89■□□□□ 0.29
CDX2Q99626 AC013467.2-201ENST00000605472 835 ntBASIC16.89■□□□□ 0.29
CDX2Q99626 AC138649.2-201ENST00000615886 705 ntBASIC16.89■□□□□ 0.29
CDX2Q99626 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.89■□□□□ 0.29
CDX2Q99626 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CDX2Q99626 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 AC138028.4-201ENST00000564984 1845 ntBASIC16.89■□□□□ 0.29
CDX2Q99626 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDX2Q99626 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.88■□□□□ 0.29
CDX2Q99626 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.88■□□□□ 0.29
CDX2Q99626 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.88■□□□□ 0.29
CDX2Q99626 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.88■□□□□ 0.29
CDX2Q99626 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.88■□□□□ 0.29
CDX2Q99626 Z97180.1-201ENST00000445173 988 ntBASIC16.88■□□□□ 0.29
CDX2Q99626 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.88■□□□□ 0.29
CDX2Q99626 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC16.88■□□□□ 0.29
CDX2Q99626 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.88■□□□□ 0.29
CDX2Q99626 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.88■□□□□ 0.29
CDX2Q99626 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CDX2Q99626 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CDX2Q99626 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CDX2Q99626 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.88■□□□□ 0.29
CDX2Q99626 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.88■□□□□ 0.29
CDX2Q99626 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX2Q99626 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CDX2Q99626 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.87■□□□□ 0.29
CDX2Q99626 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CDX2Q99626 SNX33P1-201ENST00000592116 1762 ntBASIC16.87■□□□□ 0.29
CDX2Q99626 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CDX2Q99626 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CDX2Q99626 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 SDCCAG3P2-201ENST00000326105 1023 ntBASIC16.87■□□□□ 0.29
CDX2Q99626 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
CDX2Q99626 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.87■□□□□ 0.29
CDX2Q99626 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC16.87■□□□□ 0.29
CDX2Q99626 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.87■□□□□ 0.29
CDX2Q99626 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC16.87■□□□□ 0.29
CDX2Q99626 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.87■□□□□ 0.29
CDX2Q99626 PGAM1P5-201ENST00000548011 764 ntBASIC16.87■□□□□ 0.29
CDX2Q99626 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms