Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 AL132655.2-201ENST00000596276 594 ntBASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 AC004840.1-201ENST00000636359 365 ntBASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNGAP1Q96PV0 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 AL391256.1-201ENST00000443260 1855 ntBASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 AL353779.1-201ENST00000434793 351 ntBASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 API5-211ENST00000534695 560 ntTSL 5 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 AL139011.1-202ENST00000642063 584 ntBASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNGAP1Q96PV0 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 AC140912.1-201ENST00000577171 1054 ntBASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 AC007541.1-201ENST00000570282 1469 ntBASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 AC084018.2-201ENST00000613093 2607 ntBASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 NKILA-202ENST00000614771 2598 ntBASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SYNGAP1Q96PV0 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNGAP1Q96PV0 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNGAP1Q96PV0 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNGAP1Q96PV0 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNGAP1Q96PV0 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.6■□□□□ 0.57
SYNGAP1Q96PV0 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNGAP1Q96PV0 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNGAP1Q96PV0 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNGAP1Q96PV0 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNGAP1Q96PV0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms