Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 ATP5G2P4-201ENST00000442175 420 ntBASIC16.45■□□□□ 0.22
HMGB4Q8WW32 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 DOC2GP-202ENST00000514950 1163 ntBASIC16.45■□□□□ 0.22
HMGB4Q8WW32 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 AL512361.1-201ENST00000554200 418 ntBASIC16.45■□□□□ 0.22
HMGB4Q8WW32 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 AC044860.1-202ENST00000559481 777 ntBASIC16.45■□□□□ 0.22
HMGB4Q8WW32 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 AC024267.1-201ENST00000582320 895 ntBASIC16.45■□□□□ 0.22
HMGB4Q8WW32 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 AC020916.1-201ENST00000587762 1774 ntBASIC16.45■□□□□ 0.22
HMGB4Q8WW32 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 PP12613-201ENST00000424958 2230 ntBASIC16.45■□□□□ 0.22
HMGB4Q8WW32 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 AC098614.1-201ENST00000368528 745 ntBASIC16.44■□□□□ 0.22
HMGB4Q8WW32 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 DGCR5-201ENST00000399539 862 ntBASIC16.44■□□□□ 0.22
HMGB4Q8WW32 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 AC093724.1-201ENST00000448659 1027 ntBASIC16.44■□□□□ 0.22
HMGB4Q8WW32 SERBP1P3-201ENST00000459980 809 ntBASIC16.44■□□□□ 0.22
HMGB4Q8WW32 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 AC010336.2-201ENST00000564226 506 ntBASIC16.44■□□□□ 0.22
HMGB4Q8WW32 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB4Q8WW32 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 AC087499.6-201ENST00000411576 835 ntBASIC16.43■□□□□ 0.22
HMGB4Q8WW32 AP006294.1-201ENST00000415407 339 ntBASIC16.43■□□□□ 0.22
HMGB4Q8WW32 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 GPR53P-205ENST00000457298 1084 ntBASIC16.43■□□□□ 0.22
HMGB4Q8WW32 RN7SL752P-201ENST00000463779 287 ntBASIC16.43■□□□□ 0.22
HMGB4Q8WW32 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 ZNF890P-202ENST00000530367 1156 ntBASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms