Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 RPS15P9-201ENST00000494093 319 ntBASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 AC136632.2-201ENST00000512891 861 ntBASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 AC021087.4-201ENST00000563761 564 ntBASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 PCGF3-213ENST00000620529 1899 ntBASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 AC006504.4-201ENST00000592118 1568 ntBASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 KRT18P27-201ENST00000427733 1299 ntBASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 AC107918.2-201ENST00000530817 355 ntBASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 AC008667.4-201ENST00000607370 168 ntBASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC54Q8NEL0 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CCDC54Q8NEL0 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms