Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 AP001258.2-201ENST00000529891 490 ntBASIC13.48□□□□□ -0.25
VPS13CQ709C8 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 AC104457.1-201ENST00000401024 814 ntBASIC13.48□□□□□ -0.25
VPS13CQ709C8 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 AC021097.1-201ENST00000607902 574 ntBASIC13.48□□□□□ -0.25
VPS13CQ709C8 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.48□□□□□ -0.25
VPS13CQ709C8 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
VPS13CQ709C8 KRT8P39-201ENST00000396270 1433 ntBASIC13.47□□□□□ -0.25
VPS13CQ709C8 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 AC092978.1-202ENST00000637590 1327 ntBASIC13.47□□□□□ -0.25
VPS13CQ709C8 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13CQ709C8 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13CQ709C8 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13CQ709C8 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13CQ709C8 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS13CQ709C8 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 MEP1AP4-201ENST00000423244 1087 ntBASIC13.47□□□□□ -0.25
VPS13CQ709C8 AL162726.2-201ENST00000438986 1017 ntBASIC13.47□□□□□ -0.25
VPS13CQ709C8 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 AC074044.1-201ENST00000609673 707 ntBASIC13.47□□□□□ -0.25
VPS13CQ709C8 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
VPS13CQ709C8 CES3-203ENST00000543856 3178 ntTSL 2 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13CQ709C8 AC092506.1-202ENST00000401022 528 ntBASIC13.46□□□□□ -0.25
VPS13CQ709C8 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13CQ709C8 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 RN7SL560P-201ENST00000577943 264 ntBASIC13.46□□□□□ -0.25
VPS13CQ709C8 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13CQ709C8 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13CQ709C8 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13CQ709C8 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13CQ709C8 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13CQ709C8 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13CQ709C8 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13CQ709C8 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13CQ709C8 CALR4P-201ENST00000431943 946 ntBASIC13.46□□□□□ -0.25
VPS13CQ709C8 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.46□□□□□ -0.25
VPS13CQ709C8 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms