Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 AC002056.1-201ENST00000395613 760 ntBASIC19.87■□□□□ 0.77
VPS53Q5VIR6 KRT18P13-201ENST00000400056 1290 ntBASIC19.87■□□□□ 0.77
VPS53Q5VIR6 AL355306.1-201ENST00000415580 579 ntBASIC19.87■□□□□ 0.77
VPS53Q5VIR6 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 DNAJB3-201ENST00000446806 729 ntBASIC19.87■□□□□ 0.77
VPS53Q5VIR6 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 AC005829.1-201ENST00000570002 483 ntBASIC19.87■□□□□ 0.77
VPS53Q5VIR6 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS53Q5VIR6 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.86■□□□□ 0.77
VPS53Q5VIR6 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 ELL2P1-201ENST00000413990 1906 ntBASIC19.86■□□□□ 0.77
VPS53Q5VIR6 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 MKNK2P1-201ENST00000437526 628 ntBASIC19.86■□□□□ 0.77
VPS53Q5VIR6 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 AC021097.1-201ENST00000607902 574 ntBASIC19.86■□□□□ 0.77
VPS53Q5VIR6 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS53Q5VIR6 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 KRT8P48-201ENST00000515599 1220 ntBASIC19.85■□□□□ 0.77
VPS53Q5VIR6 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
VPS53Q5VIR6 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms