Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH6P55285 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDH6P55285 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
CDH6P55285 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH6P55285 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH6P55285 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
CDH6P55285 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 REXO1L8P-201ENST00000604378 1897 ntBASIC17.16■□□□□ 0.34
CDH6P55285 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH6P55285 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH6P55285 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
CDH6P55285 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH6P55285 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
CDH6P55285 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CDH6P55285 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CDH6P55285 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH6P55285 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CDH6P55285 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
CDH6P55285 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH6P55285 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.15■□□□□ 0.34
CDH6P55285 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH6P55285 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
CDH6P55285 AL591424.1-201ENST00000442569 1213 ntBASIC17.15■□□□□ 0.34
CDH6P55285 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.15■□□□□ 0.34
CDH6P55285 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.15■□□□□ 0.34
CDH6P55285 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.15■□□□□ 0.34
CDH6P55285 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.15■□□□□ 0.34
CDH6P55285 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.15■□□□□ 0.34
CDH6P55285 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.15■□□□□ 0.34
CDH6P55285 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.15■□□□□ 0.34
CDH6P55285 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CDH6P55285 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CDH6P55285 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
CDH6P55285 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.15■□□□□ 0.34
CDH6P55285 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CDH6P55285 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH6P55285 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH6P55285 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CDH6P55285 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
CDH6P55285 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CDH6P55285 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH6P55285 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH6P55285 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH6P55285 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH6P55285 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
CDH6P55285 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.14■□□□□ 0.33
CDH6P55285 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH6P55285 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH6P55285 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH6P55285 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 KRT19P2-202ENST00000557173 1012 ntBASIC17.14■□□□□ 0.33
CDH6P55285 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH6P55285 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH6P55285 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.14■□□□□ 0.33
CDH6P55285 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
CDH6P55285 AL009183.1-201ENST00000603760 355 ntBASIC17.14■□□□□ 0.33
CDH6P55285 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.14■□□□□ 0.33
CDH6P55285 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
CDH6P55285 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH6P55285 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH6P55285 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms