Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
EPHB3P54753 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.12■□□□□ 0.33
EPHB3P54753 PCDHB18P-201ENST00000524813 2368 ntBASIC17.11■□□□□ 0.33
EPHB3P54753 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.11■□□□□ 0.33
EPHB3P54753 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.11■□□□□ 0.33
EPHB3P54753 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.11■□□□□ 0.33
EPHB3P54753 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
EPHB3P54753 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.11■□□□□ 0.33
EPHB3P54753 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.11■□□□□ 0.33
EPHB3P54753 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
EPHB3P54753 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.11■□□□□ 0.33
EPHB3P54753 AC105020.1-201ENST00000435356 2205 ntBASIC17.11■□□□□ 0.33
EPHB3P54753 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.11■□□□□ 0.33
EPHB3P54753 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
EPHB3P54753 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.11■□□□□ 0.33
EPHB3P54753 SERBP1P3-201ENST00000459980 809 ntBASIC17.11■□□□□ 0.33
EPHB3P54753 RN7SL618P-201ENST00000477850 296 ntBASIC17.11■□□□□ 0.33
EPHB3P54753 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.11■□□□□ 0.33
EPHB3P54753 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 AL662799.1-202ENST00000614205 422 ntBASIC17.11■□□□□ 0.33
EPHB3P54753 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.11■□□□□ 0.33
EPHB3P54753 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
EPHB3P54753 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.11■□□□□ 0.33
EPHB3P54753 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.11■□□□□ 0.33
EPHB3P54753 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
EPHB3P54753 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.11■□□□□ 0.33
EPHB3P54753 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
EPHB3P54753 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.11■□□□□ 0.33
EPHB3P54753 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.11■□□□□ 0.33
EPHB3P54753 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
EPHB3P54753 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
EPHB3P54753 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.1■□□□□ 0.33
EPHB3P54753 AC005622.1-201ENST00000636801 1703 ntBASIC17.1■□□□□ 0.33
EPHB3P54753 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
EPHB3P54753 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.1■□□□□ 0.33
EPHB3P54753 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.1■□□□□ 0.33
EPHB3P54753 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.1■□□□□ 0.33
EPHB3P54753 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.1■□□□□ 0.33
EPHB3P54753 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.1■□□□□ 0.33
EPHB3P54753 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
EPHB3P54753 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.1■□□□□ 0.33
EPHB3P54753 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
EPHB3P54753 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EPHB3P54753 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.1■□□□□ 0.33
EPHB3P54753 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EPHB3P54753 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.09■□□□□ 0.33
EPHB3P54753 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EPHB3P54753 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
EPHB3P54753 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.09■□□□□ 0.33
EPHB3P54753 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EPHB3P54753 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
EPHB3P54753 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.09■□□□□ 0.33
EPHB3P54753 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
EPHB3P54753 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.09■□□□□ 0.33
EPHB3P54753 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.09■□□□□ 0.33
EPHB3P54753 AL139010.1-201ENST00000454878 894 ntBASIC17.09■□□□□ 0.33
EPHB3P54753 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
EPHB3P54753 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.09■□□□□ 0.33
EPHB3P54753 AP005018.1-201ENST00000525475 301 ntBASIC17.09■□□□□ 0.33
EPHB3P54753 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
EPHB3P54753 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.09■□□□□ 0.33
EPHB3P54753 AC135586.1-201ENST00000539323 574 ntBASIC17.09■□□□□ 0.33
EPHB3P54753 SPDYE22P-201ENST00000582158 798 ntBASIC17.09■□□□□ 0.33
EPHB3P54753 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EPHB3P54753 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
EPHB3P54753 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
EPHB3P54753 BTBD7P1-201ENST00000447253 1453 ntBASIC17.09■□□□□ 0.33
EPHB3P54753 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms