Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A4P53420 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.32■□□□□ 0.36
COL4A4P53420 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A4P53420 AL162726.2-201ENST00000438986 1017 ntBASIC17.32■□□□□ 0.36
COL4A4P53420 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A4P53420 AC074044.1-201ENST00000609673 707 ntBASIC17.32■□□□□ 0.36
COL4A4P53420 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
COL4A4P53420 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
COL4A4P53420 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
COL4A4P53420 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A4P53420 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.32■□□□□ 0.36
COL4A4P53420 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A4P53420 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
COL4A4P53420 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A4P53420 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
COL4A4P53420 CSF2RBP1-201ENST00000447905 391 ntBASIC17.32■□□□□ 0.36
COL4A4P53420 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A4P53420 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.32■□□□□ 0.36
COL4A4P53420 AL583810.1-201ENST00000553344 1045 ntBASIC17.32■□□□□ 0.36
COL4A4P53420 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A4P53420 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
COL4A4P53420 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
COL4A4P53420 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL4A4P53420 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A4P53420 PRORSD1P-202ENST00000563365 2154 ntBASIC17.31■□□□□ 0.36
COL4A4P53420 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.31■□□□□ 0.36
COL4A4P53420 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A4P53420 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A4P53420 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
COL4A4P53420 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL4A4P53420 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
COL4A4P53420 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.31■□□□□ 0.36
COL4A4P53420 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.31■□□□□ 0.36
COL4A4P53420 KRT43P-201ENST00000434019 910 ntBASIC17.31■□□□□ 0.36
COL4A4P53420 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
COL4A4P53420 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.31■□□□□ 0.36
COL4A4P53420 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL4A4P53420 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.31■□□□□ 0.36
COL4A4P53420 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A4P53420 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.31■□□□□ 0.36
COL4A4P53420 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A4P53420 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.31■□□□□ 0.36
COL4A4P53420 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A4P53420 AC009542.2-202ENST00000619004 1067 ntBASIC17.31■□□□□ 0.36
COL4A4P53420 AL139099.5-201ENST00000635274 300 ntBASIC17.31■□□□□ 0.36
COL4A4P53420 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A4P53420 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL4A4P53420 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A4P53420 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 AD000864.1-201ENST00000624076 2295 ntBASIC17.3■□□□□ 0.36
COL4A4P53420 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL4A4P53420 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 FAM21FP-201ENST00000426241 1131 ntBASIC17.3■□□□□ 0.36
COL4A4P53420 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.3■□□□□ 0.36
COL4A4P53420 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A4P53420 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.3■□□□□ 0.36
COL4A4P53420 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.3■□□□□ 0.36
COL4A4P53420 AL158212.4-201ENST00000624062 1286 ntBASIC17.3■□□□□ 0.36
COL4A4P53420 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A4P53420 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
COL4A4P53420 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms