Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FAM86LP-201ENST00000478302 853 ntBASIC22.47■■□□□ 1.19
MSH6P52701 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
MSH6P52701 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC22.47■■□□□ 1.19
MSH6P52701 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH6P52701 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH6P52701 AC016629.1-201ENST00000596579 586 ntBASIC22.47■■□□□ 1.19
MSH6P52701 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 CYP4F24P-201ENST00000586049 1580 ntBASIC22.47■■□□□ 1.19
MSH6P52701 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 INTS4P2-202ENST00000614726 2019 ntBASIC22.47■■□□□ 1.19
MSH6P52701 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC22.47■■□□□ 1.19
MSH6P52701 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH6P52701 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH6P52701 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH6P52701 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH6P52701 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH6P52701 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH6P52701 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH6P52701 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH6P52701 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
MSH6P52701 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH6P52701 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH6P52701 MIR326-201ENST00000362220 95 ntBASIC22.46■■□□□ 1.19
MSH6P52701 OARD1-212ENST00000482515 832 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH6P52701 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC22.46■■□□□ 1.19
MSH6P52701 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC22.46■■□□□ 1.19
MSH6P52701 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
MSH6P52701 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC22.46■■□□□ 1.19
MSH6P52701 ATF5-205ENST00000600336 682 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH6P52701 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC22.46■■□□□ 1.19
MSH6P52701 AC244669.2-201ENST00000612320 853 ntBASIC22.46■■□□□ 1.19
MSH6P52701 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH6P52701 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH6P52701 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.19
MSH6P52701 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.19
MSH6P52701 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.19
MSH6P52701 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH6P52701 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH6P52701 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH6P52701 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC22.45■■□□□ 1.18
MSH6P52701 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC22.45■■□□□ 1.18
MSH6P52701 NEU3-202ENST00000526068 431 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH6P52701 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC22.45■■□□□ 1.18
MSH6P52701 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH6P52701 AC124947.2-201ENST00000547118 1133 ntBASIC22.45■■□□□ 1.18
MSH6P52701 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC22.45■■□□□ 1.18
MSH6P52701 HADH-212ENST00000638621 741 ntTSL 5 BASIC22.45■■□□□ 1.18
MSH6P52701 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH6P52701 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH6P52701 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC22.45■■□□□ 1.18
MSH6P52701 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH6P52701 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH6P52701 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH6P52701 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH6P52701 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH6P52701 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC22.45■■□□□ 1.18
MSH6P52701 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH6P52701 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
MSH6P52701 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC22.44■■□□□ 1.18
MSH6P52701 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
MSH6P52701 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC22.44■■□□□ 1.18
MSH6P52701 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
MSH6P52701 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC22.44■■□□□ 1.18
MSH6P52701 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
MSH6P52701 AC106760.1-201ENST00000508690 800 ntBASIC22.44■■□□□ 1.18
MSH6P52701 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC22.44■■□□□ 1.18
MSH6P52701 ACTG1P17-201ENST00000558391 1119 ntBASIC22.44■■□□□ 1.18
MSH6P52701 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC22.44■■□□□ 1.18
MSH6P52701 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC22.44■■□□□ 1.18
MSH6P52701 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MSH6P52701 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC22.43■■□□□ 1.18
MSH6P52701 AC134043.2-201ENST00000624206 2238 ntBASIC22.43■■□□□ 1.18
MSH6P52701 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH6P52701 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH6P52701 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH6P52701 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 TPR-209ENST00000613151 2478 ntTSL 5 BASIC22.43■■□□□ 1.18
MSH6P52701 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
MSH6P52701 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms