Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTPN9P43378 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTPN9P43378 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTPN9P43378 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTPN9P43378 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PTPN9P43378 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTPN9P43378 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PTPN9P43378 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.08■□□□□ 0.33
PTPN9P43378 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTPN9P43378 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTPN9P43378 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.33
PTPN9P43378 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.08■□□□□ 0.33
PTPN9P43378 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.08■□□□□ 0.32
PTPN9P43378 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.08■□□□□ 0.32
PTPN9P43378 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PTPN9P43378 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.08■□□□□ 0.32
PTPN9P43378 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.08■□□□□ 0.32
PTPN9P43378 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
PTPN9P43378 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PTPN9P43378 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.08■□□□□ 0.32
PTPN9P43378 GPX1P2-201ENST00000429271 606 ntBASIC17.08■□□□□ 0.32
PTPN9P43378 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.08■□□□□ 0.32
PTPN9P43378 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.08■□□□□ 0.32
PTPN9P43378 AC079140.1-201ENST00000508039 487 ntBASIC17.08■□□□□ 0.32
PTPN9P43378 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.08■□□□□ 0.32
PTPN9P43378 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.08■□□□□ 0.32
PTPN9P43378 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.08■□□□□ 0.32
PTPN9P43378 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.08■□□□□ 0.32
PTPN9P43378 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.08■□□□□ 0.32
PTPN9P43378 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 AC027307.2-201ENST00000591252 911 ntBASIC17.08■□□□□ 0.32
PTPN9P43378 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.08■□□□□ 0.32
PTPN9P43378 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PTPN9P43378 AC008894.3-201ENST00000624324 3103 ntBASIC17.08■□□□□ 0.32
PTPN9P43378 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PTPN9P43378 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
PTPN9P43378 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTPN9P43378 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
PTPN9P43378 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PTPN9P43378 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.07■□□□□ 0.32
PTPN9P43378 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PTPN9P43378 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PTPN9P43378 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.07■□□□□ 0.32
PTPN9P43378 FOXO1B-201ENST00000504678 1527 ntBASIC17.07■□□□□ 0.32
PTPN9P43378 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.07■□□□□ 0.32
PTPN9P43378 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.07■□□□□ 0.32
PTPN9P43378 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 RPSAP43-201ENST00000402237 625 ntBASIC17.07■□□□□ 0.32
PTPN9P43378 SPCS2P4-201ENST00000436160 681 ntBASIC17.07■□□□□ 0.32
PTPN9P43378 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.07■□□□□ 0.32
PTPN9P43378 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.07■□□□□ 0.32
PTPN9P43378 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.07■□□□□ 0.32
PTPN9P43378 LINC01225-203ENST00000563550 1244 ntBASIC17.07■□□□□ 0.32
PTPN9P43378 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.07■□□□□ 0.32
PTPN9P43378 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.07■□□□□ 0.32
PTPN9P43378 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.07■□□□□ 0.32
PTPN9P43378 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.07■□□□□ 0.32
PTPN9P43378 AL365330.1-201ENST00000607459 531 ntBASIC17.07■□□□□ 0.32
PTPN9P43378 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
PTPN9P43378 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
PTPN9P43378 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.07■□□□□ 0.32
PTPN9P43378 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.07■□□□□ 0.32
PTPN9P43378 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PTPN9P43378 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PTPN9P43378 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PTPN9P43378 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTPN9P43378 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.06■□□□□ 0.32
PTPN9P43378 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.06■□□□□ 0.32
PTPN9P43378 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.06■□□□□ 0.32
PTPN9P43378 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
PTPN9P43378 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.06■□□□□ 0.32
PTPN9P43378 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms