Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC21.28■■□□□ 1
COL18A1P39060 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC21.28■■□□□ 1
COL18A1P39060 SLED1-202ENST00000512051 380 ntBASIC21.28■■□□□ 1
COL18A1P39060 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC21.28■■□□□ 1
COL18A1P39060 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
COL18A1P39060 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
COL18A1P39060 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC21.28■■□□□ 1
COL18A1P39060 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 USP40-206ENST00000443711 628 ntTSL 2 BASIC21.28■■□□□ 1
COL18A1P39060 AL355864.2-201ENST00000447420 863 ntBASIC21.28■■□□□ 1
COL18A1P39060 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC21.28■■□□□ 1
COL18A1P39060 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC21.28■■□□□ 1
COL18A1P39060 AC243562.2-201ENST00000561247 970 ntBASIC21.28■■□□□ 1
COL18A1P39060 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC21.28■■□□□ 1
COL18A1P39060 AC000095.1-201ENST00000603208 874 ntBASIC21.28■■□□□ 1
COL18A1P39060 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC21.28■■□□□ 1
COL18A1P39060 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL18A1P39060 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL18A1P39060 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
COL18A1P39060 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL18A1P39060 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
COL18A1P39060 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL18A1P39060 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC21.27■■□□□ 1
COL18A1P39060 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC21.27■■□□□ 1
COL18A1P39060 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
COL18A1P39060 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC21.27■■□□□ 1
COL18A1P39060 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC21.27■■□□□ 1
COL18A1P39060 AC136604.1-201ENST00000418535 575 ntBASIC21.27■■□□□ 1
COL18A1P39060 AC134915.1-201ENST00000426461 574 ntBASIC21.27■■□□□ 1
COL18A1P39060 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC21.27■■□□□ 1
COL18A1P39060 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC21.27■■□□□ 1
COL18A1P39060 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC21.27■■□□□ 1
COL18A1P39060 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC21.27■■□□□ 1
COL18A1P39060 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL18A1P39060 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL18A1P39060 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC21.27■■□□□ 1
COL18A1P39060 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
COL18A1P39060 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
COL18A1P39060 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
COL18A1P39060 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
COL18A1P39060 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL18A1P39060 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
COL18A1P39060 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC21.27■□□□□ 0.99
COL18A1P39060 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL18A1P39060 AL645608.8-201ENST00000606034 2086 ntBASIC21.27■□□□□ 0.99
COL18A1P39060 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
COL18A1P39060 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC21.26■□□□□ 0.99
COL18A1P39060 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC21.26■□□□□ 0.99
COL18A1P39060 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 AC026954.1-201ENST00000429771 1293 ntBASIC21.26■□□□□ 0.99
COL18A1P39060 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC21.26■□□□□ 0.99
COL18A1P39060 AC007551.1-201ENST00000457394 519 ntBASIC21.26■□□□□ 0.99
COL18A1P39060 VDAC1P7-201ENST00000462417 847 ntBASIC21.26■□□□□ 0.99
COL18A1P39060 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
COL18A1P39060 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC21.26■□□□□ 0.99
COL18A1P39060 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 PCDHB18P-201ENST00000524813 2368 ntBASIC21.26■□□□□ 0.99
COL18A1P39060 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
COL18A1P39060 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC21.26■□□□□ 0.99
COL18A1P39060 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL18A1P39060 AC009053.2-201ENST00000563701 2365 ntBASIC21.26■□□□□ 0.99
COL18A1P39060 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC21.25■□□□□ 0.99
COL18A1P39060 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL18A1P39060 BRWD1P1-201ENST00000401091 371 ntBASIC21.25■□□□□ 0.99
COL18A1P39060 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC21.25■□□□□ 0.99
COL18A1P39060 ELP6-209ENST00000446787 894 ntTSL 3 BASIC21.25■□□□□ 0.99
COL18A1P39060 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC21.25■□□□□ 0.99
COL18A1P39060 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC21.25■□□□□ 0.99
COL18A1P39060 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC21.25■□□□□ 0.99
COL18A1P39060 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC21.25■□□□□ 0.99
COL18A1P39060 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL18A1P39060 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC21.25■□□□□ 0.99
COL18A1P39060 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
COL18A1P39060 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC21.25■□□□□ 0.99
COL18A1P39060 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC21.25■□□□□ 0.99
COL18A1P39060 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC21.25■□□□□ 0.99
COL18A1P39060 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
COL18A1P39060 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC21.25■□□□□ 0.99
COL18A1P39060 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC21.25■□□□□ 0.99
COL18A1P39060 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms