Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.07■□□□□ 0.64
SCN4AP35499 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.07■□□□□ 0.64
SCN4AP35499 AP002490.2-201ENST00000524791 560 ntBASIC19.07■□□□□ 0.64
SCN4AP35499 MBP-227ENST00000526111 581 ntTSL 4 BASIC19.07■□□□□ 0.64
SCN4AP35499 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC19.07■□□□□ 0.64
SCN4AP35499 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.07■□□□□ 0.64
SCN4AP35499 NAT9-222ENST00000583476 583 ntTSL 3 BASIC19.07■□□□□ 0.64
SCN4AP35499 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SCN4AP35499 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC19.07■□□□□ 0.64
SCN4AP35499 AC091812.3-201ENST00000621362 345 ntBASIC19.07■□□□□ 0.64
SCN4AP35499 AGER-206ENST00000375070 1463 ntTSL 5 BASIC19.07■□□□□ 0.64
SCN4AP35499 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN4AP35499 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC19.06■□□□□ 0.64
SCN4AP35499 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SCN4AP35499 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.06■□□□□ 0.64
SCN4AP35499 AC009113.1-201ENST00000570267 2443 ntBASIC19.06■□□□□ 0.64
SCN4AP35499 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.06■□□□□ 0.64
SCN4AP35499 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SCN4AP35499 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SCN4AP35499 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SCN4AP35499 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SCN4AP35499 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 KRT18P64-201ENST00000434946 1219 ntBASIC19.06■□□□□ 0.64
SCN4AP35499 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC19.06■□□□□ 0.64
SCN4AP35499 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SCN4AP35499 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.06■□□□□ 0.64
SCN4AP35499 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.06■□□□□ 0.64
SCN4AP35499 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN4AP35499 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN4AP35499 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN4AP35499 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN4AP35499 AHCYP2-201ENST00000430630 1300 ntBASIC19.05■□□□□ 0.64
SCN4AP35499 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN4AP35499 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SCN4AP35499 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN4AP35499 MIR33B-201ENST00000385104 96 ntBASIC19.05■□□□□ 0.64
SCN4AP35499 RN7SL769P-201ENST00000469386 295 ntBASIC19.05■□□□□ 0.64
SCN4AP35499 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN4AP35499 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN4AP35499 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19.05■□□□□ 0.64
SCN4AP35499 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN4AP35499 AC078819.1-201ENST00000547454 765 ntBASIC19.05■□□□□ 0.64
SCN4AP35499 AC012085.1-201ENST00000548270 765 ntBASIC19.05■□□□□ 0.64
SCN4AP35499 AC023310.1-201ENST00000554836 735 ntBASIC19.05■□□□□ 0.64
SCN4AP35499 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.05■□□□□ 0.64
SCN4AP35499 AC138951.2-201ENST00000623455 1161 ntBASIC19.05■□□□□ 0.64
SCN4AP35499 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN4AP35499 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SCN4AP35499 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN4AP35499 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SCN4AP35499 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN4AP35499 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN4AP35499 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN4AP35499 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN4AP35499 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.05■□□□□ 0.64
SCN4AP35499 PCDHB17P-201ENST00000539533 2393 ntBASIC19.05■□□□□ 0.64
SCN4AP35499 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.05■□□□□ 0.64
SCN4AP35499 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
SCN4AP35499 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN4AP35499 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN4AP35499 AC244452.3-201ENST00000636814 210 ntBASIC19.04■□□□□ 0.64
SCN4AP35499 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SCN4AP35499 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
SCN4AP35499 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 U82695.1-201ENST00000635752 1889 ntBASIC19.04■□□□□ 0.64
SCN4AP35499 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
SCN4AP35499 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN4AP35499 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 AC006001.1-201ENST00000325130 474 ntBASIC19.04■□□□□ 0.64
SCN4AP35499 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC19.04■□□□□ 0.64
SCN4AP35499 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN4AP35499 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN4AP35499 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms