Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC20.33■□□□□ 0.85
COL5A3P25940 C2orf69P2-201ENST00000562032 1123 ntBASIC20.33■□□□□ 0.85
COL5A3P25940 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
COL5A3P25940 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A3P25940 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A3P25940 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC20.33■□□□□ 0.85
COL5A3P25940 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.33■□□□□ 0.85
COL5A3P25940 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
COL5A3P25940 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A3P25940 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A3P25940 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL5A3P25940 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
COL5A3P25940 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL5A3P25940 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC20.33■□□□□ 0.84
COL5A3P25940 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL5A3P25940 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL5A3P25940 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL5A3P25940 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC20.33■□□□□ 0.84
COL5A3P25940 BCRP2-202ENST00000447763 634 ntBASIC20.33■□□□□ 0.84
COL5A3P25940 BCRP6-201ENST00000510112 632 ntBASIC20.33■□□□□ 0.84
COL5A3P25940 BCRP7-201ENST00000511549 544 ntBASIC20.33■□□□□ 0.84
COL5A3P25940 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC20.33■□□□□ 0.84
COL5A3P25940 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC20.33■□□□□ 0.84
COL5A3P25940 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC20.33■□□□□ 0.84
COL5A3P25940 AC000095.1-201ENST00000603208 874 ntBASIC20.33■□□□□ 0.84
COL5A3P25940 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
COL5A3P25940 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
COL5A3P25940 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A3P25940 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A3P25940 BNIP3P1-202ENST00000550043 1585 ntBASIC20.32■□□□□ 0.84
COL5A3P25940 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.32■□□□□ 0.84
COL5A3P25940 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A3P25940 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A3P25940 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A3P25940 AC134915.1-201ENST00000426461 574 ntBASIC20.32■□□□□ 0.84
COL5A3P25940 USP40-206ENST00000443711 628 ntTSL 2 BASIC20.32■□□□□ 0.84
COL5A3P25940 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC20.32■□□□□ 0.84
COL5A3P25940 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL5A3P25940 AC107373.2-201ENST00000607735 490 ntBASIC20.32■□□□□ 0.84
COL5A3P25940 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC20.32■□□□□ 0.84
COL5A3P25940 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC20.32■□□□□ 0.84
COL5A3P25940 AL139099.5-201ENST00000635274 300 ntBASIC20.32■□□□□ 0.84
COL5A3P25940 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC20.32■□□□□ 0.84
COL5A3P25940 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.32■□□□□ 0.84
COL5A3P25940 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
COL5A3P25940 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.32■□□□□ 0.84
COL5A3P25940 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.31■□□□□ 0.84
COL5A3P25940 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A3P25940 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
COL5A3P25940 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A3P25940 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A3P25940 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
COL5A3P25940 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A3P25940 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A3P25940 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A3P25940 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.31■□□□□ 0.84
COL5A3P25940 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL5A3P25940 AC136604.1-201ENST00000418535 575 ntBASIC20.31■□□□□ 0.84
COL5A3P25940 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC20.31■□□□□ 0.84
COL5A3P25940 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC20.31■□□□□ 0.84
COL5A3P25940 ELP6-209ENST00000446787 894 ntTSL 3 BASIC20.31■□□□□ 0.84
COL5A3P25940 VDAC1P7-201ENST00000462417 847 ntBASIC20.31■□□□□ 0.84
COL5A3P25940 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC20.31■□□□□ 0.84
COL5A3P25940 AGER-214ENST00000538695 487 ntTSL 2 BASIC20.31■□□□□ 0.84
COL5A3P25940 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A3P25940 RHOXF1P1-202ENST00000635473 501 ntBASIC20.31■□□□□ 0.84
COL5A3P25940 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
COL5A3P25940 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.31■□□□□ 0.84
COL5A3P25940 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A3P25940 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC20.31■□□□□ 0.84
COL5A3P25940 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A3P25940 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC20.31■□□□□ 0.84
COL5A3P25940 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC20.31■□□□□ 0.84
COL5A3P25940 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A3P25940 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
COL5A3P25940 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC20.3■□□□□ 0.84
COL5A3P25940 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC20.3■□□□□ 0.84
COL5A3P25940 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC20.3■□□□□ 0.84
COL5A3P25940 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC20.3■□□□□ 0.84
COL5A3P25940 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC20.3■□□□□ 0.84
COL5A3P25940 CLUHP6-201ENST00000580789 941 ntBASIC20.3■□□□□ 0.84
COL5A3P25940 AC068587.10-201ENST00000641210 219 ntBASIC20.3■□□□□ 0.84
COL5A3P25940 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC20.3■□□□□ 0.84
COL5A3P25940 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC20.3■□□□□ 0.84
COL5A3P25940 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL5A3P25940 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC20.3■□□□□ 0.84
COL5A3P25940 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC20.3■□□□□ 0.84
COL5A3P25940 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC20.3■□□□□ 0.84
COL5A3P25940 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms