Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.93■□□□□ 0.62
COL2A1P02458 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.93■□□□□ 0.62
COL2A1P02458 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.93■□□□□ 0.62
COL2A1P02458 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL2A1P02458 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.93■□□□□ 0.62
COL2A1P02458 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.93■□□□□ 0.62
COL2A1P02458 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL2A1P02458 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.93■□□□□ 0.62
COL2A1P02458 AC036164.1-201ENST00000570544 333 ntBASIC18.93■□□□□ 0.62
COL2A1P02458 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.93■□□□□ 0.62
COL2A1P02458 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL2A1P02458 MIR8072-201ENST00000614241 80 ntBASIC18.93■□□□□ 0.62
COL2A1P02458 RPSAP52-203ENST00000622976 1023 ntBASIC18.93■□□□□ 0.62
COL2A1P02458 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.93■□□□□ 0.62
COL2A1P02458 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.93■□□□□ 0.62
COL2A1P02458 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.93■□□□□ 0.62
COL2A1P02458 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
COL2A1P02458 BNIP3P1-202ENST00000550043 1585 ntBASIC18.93■□□□□ 0.62
COL2A1P02458 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
COL2A1P02458 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL2A1P02458 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
COL2A1P02458 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 TMEM14DP-201ENST00000422205 345 ntBASIC18.92■□□□□ 0.62
COL2A1P02458 TARDBPP1-201ENST00000442013 1203 ntBASIC18.92■□□□□ 0.62
COL2A1P02458 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.92■□□□□ 0.62
COL2A1P02458 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.92■□□□□ 0.62
COL2A1P02458 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.92■□□□□ 0.62
COL2A1P02458 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.92■□□□□ 0.62
COL2A1P02458 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
COL2A1P02458 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.92■□□□□ 0.62
COL2A1P02458 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.92■□□□□ 0.62
COL2A1P02458 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.92■□□□□ 0.62
COL2A1P02458 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.92■□□□□ 0.62
COL2A1P02458 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
COL2A1P02458 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
COL2A1P02458 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.92■□□□□ 0.62
COL2A1P02458 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL2A1P02458 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL2A1P02458 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.92■□□□□ 0.62
COL2A1P02458 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL2A1P02458 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.91■□□□□ 0.62
COL2A1P02458 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL2A1P02458 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.91■□□□□ 0.62
COL2A1P02458 AC136604.1-201ENST00000418535 575 ntBASIC18.91■□□□□ 0.62
COL2A1P02458 AL442647.2-201ENST00000429864 857 ntBASIC18.91■□□□□ 0.62
COL2A1P02458 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.91■□□□□ 0.62
COL2A1P02458 AC007389.4-201ENST00000454674 793 ntBASIC18.91■□□□□ 0.62
COL2A1P02458 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.91■□□□□ 0.62
COL2A1P02458 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL2A1P02458 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.91■□□□□ 0.62
COL2A1P02458 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
COL2A1P02458 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.91■□□□□ 0.62
COL2A1P02458 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
COL2A1P02458 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.91■□□□□ 0.62
COL2A1P02458 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL2A1P02458 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.91■□□□□ 0.62
COL2A1P02458 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL2A1P02458 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL2A1P02458 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL2A1P02458 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.91■□□□□ 0.62
COL2A1P02458 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL2A1P02458 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL2A1P02458 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL2A1P02458 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
COL2A1P02458 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
COL2A1P02458 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL2A1P02458 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 TOMM22P5-201ENST00000416399 439 ntBASIC18.9■□□□□ 0.62
COL2A1P02458 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.9■□□□□ 0.62
COL2A1P02458 AC092552.1-201ENST00000547243 906 ntBASIC18.9■□□□□ 0.62
COL2A1P02458 HNRNPUP1-201ENST00000554987 333 ntBASIC18.9■□□□□ 0.62
COL2A1P02458 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.9■□□□□ 0.62
COL2A1P02458 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.9■□□□□ 0.62
COL2A1P02458 CLK3P2-201ENST00000427566 1453 ntBASIC18.9■□□□□ 0.62
COL2A1P02458 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms