Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
MSH4O15457 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
MSH4O15457 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
MSH4O15457 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.41■□□□□ 0.54
MSH4O15457 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH4O15457 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH4O15457 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
MSH4O15457 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 AC003101.2-201ENST00000612557 442 ntBASIC18.41■□□□□ 0.54
MSH4O15457 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.41■□□□□ 0.54
MSH4O15457 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.41■□□□□ 0.54
MSH4O15457 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH4O15457 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
MSH4O15457 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.41■□□□□ 0.54
MSH4O15457 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
MSH4O15457 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.41■□□□□ 0.54
MSH4O15457 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.41■□□□□ 0.54
MSH4O15457 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.4■□□□□ 0.54
MSH4O15457 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.4■□□□□ 0.54
MSH4O15457 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
MSH4O15457 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.4■□□□□ 0.54
MSH4O15457 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 FAM86GP-201ENST00000448322 971 ntBASIC18.4■□□□□ 0.54
MSH4O15457 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.4■□□□□ 0.54
MSH4O15457 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.4■□□□□ 0.54
MSH4O15457 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.4■□□□□ 0.54
MSH4O15457 BANF1P1-201ENST00000553684 263 ntBASIC18.4■□□□□ 0.54
MSH4O15457 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.4■□□□□ 0.54
MSH4O15457 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.4■□□□□ 0.54
MSH4O15457 AC093512.1-201ENST00000617969 520 ntBASIC18.4■□□□□ 0.54
MSH4O15457 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
MSH4O15457 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
MSH4O15457 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.4■□□□□ 0.54
MSH4O15457 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
MSH4O15457 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSH4O15457 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
MSH4O15457 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.4■□□□□ 0.54
MSH4O15457 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.4■□□□□ 0.54
MSH4O15457 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
MSH4O15457 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MSH4O15457 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MSH4O15457 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.39■□□□□ 0.54
MSH4O15457 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
MSH4O15457 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.39■□□□□ 0.53
MSH4O15457 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
MSH4O15457 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.39■□□□□ 0.53
MSH4O15457 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
MSH4O15457 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.39■□□□□ 0.53
MSH4O15457 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.39■□□□□ 0.53
MSH4O15457 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 KLF2P3-201ENST00000451977 1087 ntBASIC18.39■□□□□ 0.53
MSH4O15457 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.39■□□□□ 0.53
MSH4O15457 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.39■□□□□ 0.53
MSH4O15457 DUX4L27-201ENST00000554796 1261 ntBASIC18.39■□□□□ 0.53
MSH4O15457 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.39■□□□□ 0.53
MSH4O15457 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.39■□□□□ 0.53
MSH4O15457 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.39■□□□□ 0.53
MSH4O15457 AC024267.1-201ENST00000582320 895 ntBASIC18.39■□□□□ 0.53
MSH4O15457 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 AC007967.4-201ENST00000614700 386 ntBASIC18.39■□□□□ 0.53
MSH4O15457 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.39■□□□□ 0.53
MSH4O15457 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.39■□□□□ 0.53
MSH4O15457 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.39■□□□□ 0.53
MSH4O15457 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 AC099398.1-201ENST00000567919 2776 ntBASIC18.39■□□□□ 0.53
MSH4O15457 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.39■□□□□ 0.53
MSH4O15457 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.39■□□□□ 0.53
MSH4O15457 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.39■□□□□ 0.53
MSH4O15457 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
MSH4O15457 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSH4O15457 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
MSH4O15457 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
MSH4O15457 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.38■□□□□ 0.53
MSH4O15457 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSH4O15457 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms