Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 HTR7P1-202ENST00000624664 4411 ntBASIC19.89■□□□□ 0.77
SALL3Q9BXA9 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 SLC25A39P2-201ENST00000537614 270 ntBASIC19.89■□□□□ 0.77
SALL3Q9BXA9 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SALL3Q9BXA9 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 COQ9-214ENST00000567933 882 ntTSL 3 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SALL3Q9BXA9 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 CD81-202ENST00000381036 880 ntTSL 3 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 HAUS4P1-201ENST00000406739 1145 ntBASIC19.87■□□□□ 0.77
SALL3Q9BXA9 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SALL3Q9BXA9 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms