Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 AC069120.2-201ENST00000524091 540 ntBASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 AC105020.1-201ENST00000435356 2205 ntBASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 FO538757.1-201ENST00000623083 1397 ntBASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAIPQ9BWF2 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 CROCCP1-201ENST00000426910 5675 ntBASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 INGX-202ENST00000489074 768 ntBASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 PRYP6-201ENST00000514804 343 ntBASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 MIR4745-201ENST00000577608 62 ntBASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 AC018529.1-201ENST00000613063 361 ntBASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 PCDHA14-201ENST00000506751 2298 ntBASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 AP3S2-216ENST00000617003 1561 ntBASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAIPQ9BWF2 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 OR6D1P-203ENST00000641209 4860 ntBASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms