Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
BRF1Q92994 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.41■□□□□ 0.7
BRF1Q92994 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
BRF1Q92994 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
BRF1Q92994 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.4■□□□□ 0.7
BRF1Q92994 CICP6-201ENST00000457191 2729 ntBASIC19.4■□□□□ 0.7
BRF1Q92994 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 AC016027.1-202ENST00000607927 1699 ntBASIC19.4■□□□□ 0.7
BRF1Q92994 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.4■□□□□ 0.7
BRF1Q92994 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.4■□□□□ 0.7
BRF1Q92994 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 AC023274.1-201ENST00000418278 595 ntBASIC19.4■□□□□ 0.7
BRF1Q92994 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.4■□□□□ 0.7
BRF1Q92994 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.4■□□□□ 0.7
BRF1Q92994 AP002472.1-201ENST00000577490 586 ntBASIC19.4■□□□□ 0.7
BRF1Q92994 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.4■□□□□ 0.7
BRF1Q92994 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
BRF1Q92994 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.4■□□□□ 0.7
BRF1Q92994 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.4■□□□□ 0.7
BRF1Q92994 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
BRF1Q92994 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.4■□□□□ 0.7
BRF1Q92994 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BRF1Q92994 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
BRF1Q92994 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.39■□□□□ 0.7
BRF1Q92994 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
BRF1Q92994 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.39■□□□□ 0.7
BRF1Q92994 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
BRF1Q92994 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.39■□□□□ 0.69
BRF1Q92994 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
BRF1Q92994 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.39■□□□□ 0.69
BRF1Q92994 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
BRF1Q92994 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.39■□□□□ 0.69
BRF1Q92994 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
BRF1Q92994 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
BRF1Q92994 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
BRF1Q92994 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.39■□□□□ 0.69
BRF1Q92994 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.39■□□□□ 0.69
BRF1Q92994 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.39■□□□□ 0.69
BRF1Q92994 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.39■□□□□ 0.69
BRF1Q92994 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.39■□□□□ 0.69
BRF1Q92994 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.39■□□□□ 0.69
BRF1Q92994 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BRF1Q92994 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
BRF1Q92994 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
BRF1Q92994 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
BRF1Q92994 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
BRF1Q92994 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.38■□□□□ 0.69
BRF1Q92994 MIR574-201ENST00000385209 96 ntBASIC19.38■□□□□ 0.69
BRF1Q92994 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.38■□□□□ 0.69
BRF1Q92994 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.38■□□□□ 0.69
BRF1Q92994 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.38■□□□□ 0.69
BRF1Q92994 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.38■□□□□ 0.69
BRF1Q92994 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms