Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 AL031731.1-201ENST00000642131 2094 ntBASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 GGT4P-201ENST00000623672 1708 ntBASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 ELK2BP-201ENST00000415014 1224 ntBASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 SLC25A6P2-201ENST00000497974 877 ntBASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 AC025062.2-201ENST00000605477 670 ntBASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 AC008741.2-201ENST00000612792 3115 ntBASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 GPAA1P2-202ENST00000606848 1787 ntBASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 AL662844.4-201ENST00000606367 2838 ntBASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
CCDC54Q8NEL0 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC54Q8NEL0 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms