Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 RN7SL752P-201ENST00000463779 287 ntBASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 HILS1-202ENST00000545329 423 ntBASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 AC020765.3-201ENST00000613051 740 ntBASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 AL033527.5-202ENST00000641632 1098 ntBASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 KRT8P12-202ENST00000472924 1397 ntBASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NPAS3Q8IXF0 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 AL512384.1-201ENST00000406683 331 ntBASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 AC026979.3-201ENST00000607315 403 ntBASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 AC007431.3-201ENST00000623221 587 ntBASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 AC141586.5-201ENST00000624546 2050 ntBASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NPAS3Q8IXF0 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.96■□□□□ 0.3
NPAS3Q8IXF0 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.96■□□□□ 0.3
NPAS3Q8IXF0 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
NPAS3Q8IXF0 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NPAS3Q8IXF0 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.96■□□□□ 0.3
NPAS3Q8IXF0 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.96■□□□□ 0.3
NPAS3Q8IXF0 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.96■□□□□ 0.3
NPAS3Q8IXF0 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 SLC7A15P-201ENST00000424028 1363 ntBASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 SPDYE17-201ENST00000412399 783 ntBASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 HLA-V-201ENST00000429037 534 ntBASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 AC132938.2-201ENST00000579188 680 ntBASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 AL591163.1-201ENST00000641757 987 ntBASIC16.95■□□□□ 0.3
NPAS3Q8IXF0 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms