Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHD3Q12873 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC14.19□□□□□ -0.14
CHD3Q12873 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
CHD3Q12873 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.19□□□□□ -0.14
CHD3Q12873 FOXO1B-201ENST00000504678 1527 ntBASIC14.19□□□□□ -0.14
CHD3Q12873 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHD3Q12873 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHD3Q12873 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHD3Q12873 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHD3Q12873 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHD3Q12873 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.19□□□□□ -0.14
CHD3Q12873 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CHD3Q12873 AC243562.1-201ENST00000560672 389 ntBASIC14.19□□□□□ -0.14
CHD3Q12873 AC051619.7-201ENST00000568314 623 ntBASIC14.19□□□□□ -0.14
CHD3Q12873 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHD3Q12873 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CHD3Q12873 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.18□□□□□ -0.14
CHD3Q12873 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.18□□□□□ -0.14
CHD3Q12873 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.18□□□□□ -0.14
CHD3Q12873 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CHD3Q12873 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.18□□□□□ -0.14
CHD3Q12873 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.18□□□□□ -0.14
CHD3Q12873 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 MST1L-201ENST00000442552 2185 ntBASIC14.18□□□□□ -0.14
CHD3Q12873 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CHD3Q12873 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.18□□□□□ -0.14
CHD3Q12873 FAM58DP-201ENST00000428076 619 ntBASIC14.18□□□□□ -0.14
CHD3Q12873 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.18□□□□□ -0.14
CHD3Q12873 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC14.18□□□□□ -0.14
CHD3Q12873 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.18□□□□□ -0.14
CHD3Q12873 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.18□□□□□ -0.14
CHD3Q12873 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.18□□□□□ -0.14
CHD3Q12873 LINC02199-201ENST00000506655 2702 ntBASIC14.18□□□□□ -0.14
CHD3Q12873 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.18□□□□□ -0.14
CHD3Q12873 SNX33P1-201ENST00000592116 1762 ntBASIC14.18□□□□□ -0.14
CHD3Q12873 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.18□□□□□ -0.14
CHD3Q12873 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.18□□□□□ -0.14
CHD3Q12873 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CHD3Q12873 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 DOC2GP-204ENST00000639052 2548 ntBASIC14.18□□□□□ -0.14
CHD3Q12873 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CHD3Q12873 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CHD3Q12873 GPS2P2-201ENST00000430745 888 ntBASIC14.17□□□□□ -0.14
CHD3Q12873 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.17□□□□□ -0.14
CHD3Q12873 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.17□□□□□ -0.14
CHD3Q12873 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.17□□□□□ -0.14
CHD3Q12873 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.17□□□□□ -0.14
CHD3Q12873 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.17□□□□□ -0.14
CHD3Q12873 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.17□□□□□ -0.14
CHD3Q12873 LINC02560-201ENST00000596379 459 ntBASIC14.17□□□□□ -0.14
CHD3Q12873 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
CHD3Q12873 HYMAI-201ENST00000635591 3347 ntBASIC14.17□□□□□ -0.14
CHD3Q12873 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 AC079328.2-201ENST00000561241 3354 ntBASIC14.17□□□□□ -0.14
CHD3Q12873 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.17□□□□□ -0.14
CHD3Q12873 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.17□□□□□ -0.14
CHD3Q12873 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.17□□□□□ -0.14
CHD3Q12873 GGT4P-201ENST00000623672 1708 ntBASIC14.17□□□□□ -0.14
CHD3Q12873 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.17□□□□□ -0.14
CHD3Q12873 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.17□□□□□ -0.14
CHD3Q12873 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CHD3Q12873 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CHD3Q12873 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.17□□□□□ -0.14
CHD3Q12873 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.17□□□□□ -0.14
CHD3Q12873 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CHD3Q12873 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 DUX4L27-201ENST00000554796 1261 ntBASIC14.17□□□□□ -0.14
CHD3Q12873 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.17□□□□□ -0.14
CHD3Q12873 AC091167.2-201ENST00000579581 588 ntBASIC14.17□□□□□ -0.14
CHD3Q12873 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.17□□□□□ -0.14
CHD3Q12873 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHD3Q12873 MIR6752-201ENST00000618442 71 ntBASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms