Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.16□□□□□ -0.14
ABCA4P78363 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA4P78363 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.16□□□□□ -0.14
ABCA4P78363 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA4P78363 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA4P78363 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA4P78363 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.16□□□□□ -0.14
ABCA4P78363 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.16□□□□□ -0.14
ABCA4P78363 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.16□□□□□ -0.14
ABCA4P78363 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.16□□□□□ -0.14
ABCA4P78363 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.16□□□□□ -0.14
ABCA4P78363 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA4P78363 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
ABCA4P78363 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA4P78363 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.16□□□□□ -0.14
ABCA4P78363 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA4P78363 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ABCA4P78363 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
ABCA4P78363 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.15□□□□□ -0.14
ABCA4P78363 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA4P78363 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ABCA4P78363 CETN4P-206ENST00000642099 2168 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC14.15□□□□□ -0.14
ABCA4P78363 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
ABCA4P78363 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 SPDYE19P-201ENST00000338590 713 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
ABCA4P78363 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
ABCA4P78363 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.15□□□□□ -0.14
ABCA4P78363 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 KRT17P8-201ENST00000540749 863 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA4P78363 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
ABCA4P78363 AL589739.1-201ENST00000607720 493 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 SPTSSB-204ENST00000617024 1292 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ABCA4P78363 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
ABCA4P78363 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.15□□□□□ -0.14
ABCA4P78363 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA4P78363 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA4P78363 STX3-203ENST00000529177 1571 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA4P78363 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 TUBB8P12-201ENST00000308911 1335 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 TUBB7P-202ENST00000428444 1305 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 TUBB8P7-204ENST00000567960 1332 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA4P78363 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 AC093004.1-201ENST00000508850 424 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 FAM8A2P-201ENST00000528813 1142 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA4P78363 AC044860.1-202ENST00000559481 777 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 AC021097.1-201ENST00000607902 574 ntBASIC14.15□□□□□ -0.14
ABCA4P78363 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA4P78363 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ABCA4P78363 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
ABCA4P78363 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
ABCA4P78363 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
ABCA4P78363 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC14.14□□□□□ -0.15
ABCA4P78363 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
ABCA4P78363 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.14□□□□□ -0.15
ABCA4P78363 INE1-201ENST00000456273 945 ntBASIC14.14□□□□□ -0.15
ABCA4P78363 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.14□□□□□ -0.15
ABCA4P78363 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.14□□□□□ -0.15
ABCA4P78363 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.14□□□□□ -0.15
ABCA4P78363 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.14□□□□□ -0.15
ABCA4P78363 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
ABCA4P78363 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA4P78363 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.14□□□□□ -0.15
ABCA4P78363 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms