Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.24■□□□□ 0.35
HDAC4P56524 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.24■□□□□ 0.35
HDAC4P56524 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
HDAC4P56524 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HDAC4P56524 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.24■□□□□ 0.35
HDAC4P56524 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HDAC4P56524 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.24■□□□□ 0.35
HDAC4P56524 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.24■□□□□ 0.35
HDAC4P56524 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HDAC4P56524 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HDAC4P56524 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HDAC4P56524 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.24■□□□□ 0.35
HDAC4P56524 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
HDAC4P56524 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.23■□□□□ 0.35
HDAC4P56524 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
HDAC4P56524 AC016027.1-202ENST00000607927 1699 ntBASIC17.23■□□□□ 0.35
HDAC4P56524 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
HDAC4P56524 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC4P56524 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC4P56524 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HDAC4P56524 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.23■□□□□ 0.35
HDAC4P56524 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.23■□□□□ 0.35
HDAC4P56524 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 AC099522.2-201ENST00000607001 744 ntBASIC17.23■□□□□ 0.35
HDAC4P56524 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC4P56524 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC4P56524 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
HDAC4P56524 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HDAC4P56524 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC4P56524 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HDAC4P56524 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.23■□□□□ 0.35
HDAC4P56524 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.23■□□□□ 0.35
HDAC4P56524 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC4P56524 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
HDAC4P56524 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC4P56524 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HDAC4P56524 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HDAC4P56524 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
HDAC4P56524 PMS2P7-201ENST00000506558 1336 ntBASIC17.22■□□□□ 0.35
HDAC4P56524 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HDAC4P56524 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC4P56524 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC4P56524 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 MCCD1P2-201ENST00000423228 335 ntBASIC17.22■□□□□ 0.35
HDAC4P56524 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.22■□□□□ 0.35
HDAC4P56524 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.22■□□□□ 0.35
HDAC4P56524 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.22■□□□□ 0.35
HDAC4P56524 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC4P56524 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HDAC4P56524 AC002347.1-201ENST00000569543 541 ntBASIC17.22■□□□□ 0.35
HDAC4P56524 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.22■□□□□ 0.35
HDAC4P56524 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC4P56524 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC4P56524 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.22■□□□□ 0.35
HDAC4P56524 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HDAC4P56524 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
HDAC4P56524 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.22■□□□□ 0.35
HDAC4P56524 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.22■□□□□ 0.35
HDAC4P56524 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
HDAC4P56524 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC4P56524 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms