Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL4A4P53420 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 TUBB1P2-201ENST00000422712 1306 ntBASIC17.35■□□□□ 0.37
COL4A4P53420 TUBB1P1-201ENST00000503144 1300 ntBASIC17.35■□□□□ 0.37
COL4A4P53420 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.35■□□□□ 0.37
COL4A4P53420 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.35■□□□□ 0.37
COL4A4P53420 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
COL4A4P53420 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.35■□□□□ 0.37
COL4A4P53420 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.35■□□□□ 0.37
COL4A4P53420 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC17.35■□□□□ 0.37
COL4A4P53420 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.35■□□□□ 0.37
COL4A4P53420 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.35■□□□□ 0.37
COL4A4P53420 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.35■□□□□ 0.37
COL4A4P53420 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.35■□□□□ 0.37
COL4A4P53420 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.35■□□□□ 0.37
COL4A4P53420 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.35■□□□□ 0.37
COL4A4P53420 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.35■□□□□ 0.37
COL4A4P53420 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL4A4P53420 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL4A4P53420 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A4P53420 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 BRWD1P1-201ENST00000401091 371 ntBASIC17.34■□□□□ 0.37
COL4A4P53420 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC17.34■□□□□ 0.37
COL4A4P53420 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
COL4A4P53420 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A4P53420 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A4P53420 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.34■□□□□ 0.37
COL4A4P53420 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.34■□□□□ 0.37
COL4A4P53420 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A4P53420 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A4P53420 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A4P53420 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A4P53420 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.34■□□□□ 0.37
COL4A4P53420 AC233724.13-201ENST00000598383 410 ntBASIC17.34■□□□□ 0.37
COL4A4P53420 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC17.34■□□□□ 0.37
COL4A4P53420 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
COL4A4P53420 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A4P53420 MIR6869-201ENST00000619434 62 ntBASIC17.34■□□□□ 0.37
COL4A4P53420 FLJ38576-201ENST00000623820 2459 ntBASIC17.34■□□□□ 0.37
COL4A4P53420 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 AC106886.4-201ENST00000623557 2502 ntBASIC17.34■□□□□ 0.37
COL4A4P53420 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
COL4A4P53420 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL4A4P53420 GPAA1P2-202ENST00000606848 1787 ntBASIC17.34■□□□□ 0.37
COL4A4P53420 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A4P53420 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A4P53420 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 AC120498.9-201ENST00000339021 3867 ntBASIC17.34■□□□□ 0.37
COL4A4P53420 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.34■□□□□ 0.37
COL4A4P53420 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A4P53420 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.33■□□□□ 0.37
COL4A4P53420 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.33■□□□□ 0.37
COL4A4P53420 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.33■□□□□ 0.37
COL4A4P53420 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A4P53420 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A4P53420 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A4P53420 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A4P53420 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.33■□□□□ 0.37
COL4A4P53420 ACTBP11-201ENST00000436287 1126 ntBASIC17.33■□□□□ 0.37
COL4A4P53420 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A4P53420 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.33■□□□□ 0.37
COL4A4P53420 ZNF767P-206ENST00000513792 565 ntBASIC17.33■□□□□ 0.37
COL4A4P53420 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A4P53420 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A4P53420 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.33■□□□□ 0.37
COL4A4P53420 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A4P53420 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.33■□□□□ 0.37
COL4A4P53420 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
COL4A4P53420 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A4P53420 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
COL4A4P53420 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A4P53420 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A4P53420 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.33■□□□□ 0.36
COL4A4P53420 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A4P53420 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
COL4A4P53420 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A4P53420 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A4P53420 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A4P53420 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A4P53420 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms