Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 NORAD-201ENST00000565493 5339 ntBASIC19.3■□□□□ 0.68
MRE11P49959 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MRE11P49959 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MRE11P49959 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MRE11P49959 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC19.29■□□□□ 0.68
MRE11P49959 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
MRE11P49959 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.29■□□□□ 0.68
MRE11P49959 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.29■□□□□ 0.68
MRE11P49959 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
MRE11P49959 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.29■□□□□ 0.68
MRE11P49959 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
MRE11P49959 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MRE11P49959 AC098831.1-202ENST00000438821 336 ntBASIC19.29■□□□□ 0.68
MRE11P49959 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.29■□□□□ 0.68
MRE11P49959 AC112698.1-201ENST00000510299 916 ntBASIC19.29■□□□□ 0.68
MRE11P49959 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.29■□□□□ 0.68
MRE11P49959 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.29■□□□□ 0.68
MRE11P49959 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.29■□□□□ 0.68
MRE11P49959 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.29■□□□□ 0.68
MRE11P49959 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.29■□□□□ 0.68
MRE11P49959 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.29■□□□□ 0.68
MRE11P49959 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
MRE11P49959 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MRE11P49959 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MRE11P49959 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.28■□□□□ 0.68
MRE11P49959 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC19.28■□□□□ 0.68
MRE11P49959 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.28■□□□□ 0.68
MRE11P49959 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC19.28■□□□□ 0.68
MRE11P49959 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC19.28■□□□□ 0.68
MRE11P49959 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
MRE11P49959 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
MRE11P49959 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.28■□□□□ 0.68
MRE11P49959 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.28■□□□□ 0.68
MRE11P49959 RNPS1P1-201ENST00000507437 918 ntBASIC19.28■□□□□ 0.68
MRE11P49959 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.28■□□□□ 0.68
MRE11P49959 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.28■□□□□ 0.68
MRE11P49959 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
MRE11P49959 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.28■□□□□ 0.68
MRE11P49959 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.28■□□□□ 0.68
MRE11P49959 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
MRE11P49959 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.28■□□□□ 0.68
MRE11P49959 AC026748.1-201ENST00000624349 3251 ntBASIC19.28■□□□□ 0.68
MRE11P49959 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.28■□□□□ 0.68
MRE11P49959 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC19.28■□□□□ 0.68
MRE11P49959 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 GGT4P-201ENST00000623672 1708 ntBASIC19.28■□□□□ 0.68
MRE11P49959 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.28■□□□□ 0.68
MRE11P49959 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.28■□□□□ 0.68
MRE11P49959 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MRE11P49959 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
MRE11P49959 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MRE11P49959 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MRE11P49959 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.27■□□□□ 0.68
MRE11P49959 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC19.27■□□□□ 0.68
MRE11P49959 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MRE11P49959 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
MRE11P49959 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MRE11P49959 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MRE11P49959 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.27■□□□□ 0.68
MRE11P49959 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MRE11P49959 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC19.27■□□□□ 0.68
MRE11P49959 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
MRE11P49959 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC19.27■□□□□ 0.68
MRE11P49959 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.27■□□□□ 0.68
MRE11P49959 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
MRE11P49959 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MRE11P49959 RPS8P6-201ENST00000426177 609 ntBASIC19.27■□□□□ 0.68
MRE11P49959 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms