Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.35■□□□□ 0.37
BDNFP23560 AC018529.1-201ENST00000613063 361 ntBASIC17.35■□□□□ 0.37
BDNFP23560 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
BDNFP23560 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.35■□□□□ 0.37
BDNFP23560 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
BDNFP23560 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.35■□□□□ 0.37
BDNFP23560 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
BDNFP23560 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.35■□□□□ 0.37
BDNFP23560 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.35■□□□□ 0.37
BDNFP23560 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BDNFP23560 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
BDNFP23560 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
BDNFP23560 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.34■□□□□ 0.37
BDNFP23560 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
BDNFP23560 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.34■□□□□ 0.37
BDNFP23560 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.34■□□□□ 0.37
BDNFP23560 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.34■□□□□ 0.37
BDNFP23560 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.34■□□□□ 0.37
BDNFP23560 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.34■□□□□ 0.37
BDNFP23560 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.34■□□□□ 0.37
BDNFP23560 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BDNFP23560 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.34■□□□□ 0.37
BDNFP23560 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
BDNFP23560 AC005498.2-205ENST00000593218 784 ntBASIC17.34■□□□□ 0.37
BDNFP23560 AC003101.2-201ENST00000612557 442 ntBASIC17.34■□□□□ 0.37
BDNFP23560 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
BDNFP23560 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
BDNFP23560 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
BDNFP23560 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
BDNFP23560 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.33■□□□□ 0.37
BDNFP23560 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.33■□□□□ 0.37
BDNFP23560 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BDNFP23560 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
BDNFP23560 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BDNFP23560 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
BDNFP23560 FAM220BP-201ENST00000377689 816 ntBASIC17.33■□□□□ 0.36
BDNFP23560 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
BDNFP23560 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.33■□□□□ 0.36
BDNFP23560 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.33■□□□□ 0.36
BDNFP23560 AC107890.1-201ENST00000422478 521 ntBASIC17.33■□□□□ 0.36
BDNFP23560 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.33■□□□□ 0.36
BDNFP23560 RNA5SP410-201ENST00000516285 106 ntBASIC17.33■□□□□ 0.36
BDNFP23560 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.33■□□□□ 0.36
BDNFP23560 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.33■□□□□ 0.36
BDNFP23560 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.33■□□□□ 0.36
BDNFP23560 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.33■□□□□ 0.36
BDNFP23560 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BDNFP23560 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.33■□□□□ 0.36
BDNFP23560 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.33■□□□□ 0.36
BDNFP23560 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BDNFP23560 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.33■□□□□ 0.36
BDNFP23560 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BDNFP23560 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BDNFP23560 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
BDNFP23560 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.33■□□□□ 0.36
BDNFP23560 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BDNFP23560 LINC01144-201ENST00000626198 1710 ntBASIC17.33■□□□□ 0.36
BDNFP23560 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
BDNFP23560 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
BDNFP23560 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BDNFP23560 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
BDNFP23560 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
BDNFP23560 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.32■□□□□ 0.36
BDNFP23560 AL589702.1-201ENST00000641229 1509 ntBASIC17.32■□□□□ 0.36
BDNFP23560 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.32■□□□□ 0.36
BDNFP23560 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.32■□□□□ 0.36
BDNFP23560 MIR943-201ENST00000401286 94 ntBASIC17.32■□□□□ 0.36
BDNFP23560 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.32■□□□□ 0.36
BDNFP23560 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.32■□□□□ 0.36
BDNFP23560 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.32■□□□□ 0.36
BDNFP23560 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.32■□□□□ 0.36
BDNFP23560 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.32■□□□□ 0.36
BDNFP23560 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.32■□□□□ 0.36
BDNFP23560 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.32■□□□□ 0.36
BDNFP23560 AL390955.2-201ENST00000603032 514 ntBASIC17.32■□□□□ 0.36
BDNFP23560 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
BDNFP23560 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BDNFP23560 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms