Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.57■□□□□ 0.08
COL5A1P20908 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.57■□□□□ 0.08
COL5A1P20908 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL5A1P20908 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL5A1P20908 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL5A1P20908 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
COL5A1P20908 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL5A1P20908 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 PCGF3-213ENST00000620529 1899 ntBASIC15.56■□□□□ 0.08
COL5A1P20908 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.56■□□□□ 0.08
COL5A1P20908 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.56■□□□□ 0.08
COL5A1P20908 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.56■□□□□ 0.08
COL5A1P20908 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 AL645728.1-201ENST00000366221 2101 ntBASIC15.56■□□□□ 0.08
COL5A1P20908 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
COL5A1P20908 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
COL5A1P20908 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
COL5A1P20908 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.56■□□□□ 0.08
COL5A1P20908 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.56■□□□□ 0.08
COL5A1P20908 KRT43P-201ENST00000434019 910 ntBASIC15.56■□□□□ 0.08
COL5A1P20908 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.56■□□□□ 0.08
COL5A1P20908 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.56■□□□□ 0.08
COL5A1P20908 PARP8-218ENST00000513738 596 ntTSL 4 BASIC15.56■□□□□ 0.08
COL5A1P20908 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.56■□□□□ 0.08
COL5A1P20908 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.56■□□□□ 0.08
COL5A1P20908 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.56■□□□□ 0.08
COL5A1P20908 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.56■□□□□ 0.08
COL5A1P20908 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL5A1P20908 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL5A1P20908 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.56■□□□□ 0.08
COL5A1P20908 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.56■□□□□ 0.08
COL5A1P20908 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
COL5A1P20908 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL5A1P20908 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL5A1P20908 PDIA3P1-201ENST00000471856 1510 ntBASIC15.55■□□□□ 0.08
COL5A1P20908 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.55■□□□□ 0.08
COL5A1P20908 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 CDC14C-201ENST00000428251 1719 ntBASIC15.55■□□□□ 0.08
COL5A1P20908 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL5A1P20908 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL5A1P20908 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 AZGP1P1-201ENST00000411909 902 ntBASIC15.55■□□□□ 0.08
COL5A1P20908 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.55■□□□□ 0.08
COL5A1P20908 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.55■□□□□ 0.08
COL5A1P20908 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.55■□□□□ 0.08
COL5A1P20908 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.55■□□□□ 0.08
COL5A1P20908 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.55■□□□□ 0.08
COL5A1P20908 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.55■□□□□ 0.08
COL5A1P20908 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC15.55■□□□□ 0.08
COL5A1P20908 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.55■□□□□ 0.08
COL5A1P20908 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.55■□□□□ 0.08
COL5A1P20908 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC15.55■□□□□ 0.08
COL5A1P20908 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL5A1P20908 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.54■□□□□ 0.08
COL5A1P20908 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
COL5A1P20908 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.54■□□□□ 0.08
COL5A1P20908 FAM8A2P-201ENST00000528813 1142 ntBASIC15.54■□□□□ 0.08
COL5A1P20908 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
COL5A1P20908 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.54■□□□□ 0.08
COL5A1P20908 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.54■□□□□ 0.08
COL5A1P20908 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
COL5A1P20908 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
COL5A1P20908 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms