Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.44■□□□□ 0.22
MSH3P20585 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.43■□□□□ 0.22
MSH3P20585 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
MSH3P20585 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
MSH3P20585 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 KRT18P13-201ENST00000400056 1290 ntBASIC16.43■□□□□ 0.22
MSH3P20585 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 UPF3AP3-201ENST00000420996 769 ntBASIC16.43■□□□□ 0.22
MSH3P20585 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.43■□□□□ 0.22
MSH3P20585 GPX1P2-201ENST00000429271 606 ntBASIC16.43■□□□□ 0.22
MSH3P20585 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 ALG1L5P-201ENST00000482043 771 ntBASIC16.43■□□□□ 0.22
MSH3P20585 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.43■□□□□ 0.22
MSH3P20585 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
MSH3P20585 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.43■□□□□ 0.22
MSH3P20585 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.43■□□□□ 0.22
MSH3P20585 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
MSH3P20585 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
MSH3P20585 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.43■□□□□ 0.22
MSH3P20585 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.43■□□□□ 0.22
MSH3P20585 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.43■□□□□ 0.22
MSH3P20585 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.43■□□□□ 0.22
MSH3P20585 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
MSH3P20585 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSH3P20585 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
MSH3P20585 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.42■□□□□ 0.22
MSH3P20585 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.42■□□□□ 0.22
MSH3P20585 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
MSH3P20585 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
MSH3P20585 GPAA1P2-202ENST00000606848 1787 ntBASIC16.42■□□□□ 0.22
MSH3P20585 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
MSH3P20585 AC092171.3-201ENST00000610122 2651 ntBASIC16.42■□□□□ 0.22
MSH3P20585 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.42■□□□□ 0.22
MSH3P20585 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.42■□□□□ 0.22
MSH3P20585 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 ACTG1P14-201ENST00000446382 1122 ntBASIC16.42■□□□□ 0.22
MSH3P20585 AC112482.1-201ENST00000492080 688 ntBASIC16.42■□□□□ 0.22
MSH3P20585 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.42■□□□□ 0.22
MSH3P20585 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.42■□□□□ 0.22
MSH3P20585 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.42■□□□□ 0.22
MSH3P20585 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
MSH3P20585 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.42■□□□□ 0.22
MSH3P20585 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.42■□□□□ 0.22
MSH3P20585 AC020765.3-201ENST00000613051 740 ntBASIC16.42■□□□□ 0.22
MSH3P20585 AC092902.6-201ENST00000641783 218 ntBASIC16.42■□□□□ 0.22
MSH3P20585 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
MSH3P20585 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
MSH3P20585 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
MSH3P20585 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.42■□□□□ 0.22
MSH3P20585 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSH3P20585 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.41■□□□□ 0.22
MSH3P20585 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
MSH3P20585 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
MSH3P20585 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms