Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
CSB-PGBD3P0DP91 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CSB-PGBD3P0DP91 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CSB-PGBD3P0DP91 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CSB-PGBD3P0DP91 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CSB-PGBD3P0DP91 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 HIST1H2BPS3-201ENST00000419683 341 ntBASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 AL033527.4-201ENST00000641026 673 ntBASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CSB-PGBD3P0DP91 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 AC067852.2-201ENST00000590513 2313 ntBASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 AC092552.1-201ENST00000547243 906 ntBASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 ORC6-206ENST00000568364 888 ntTSL 5 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 AC133552.6-201ENST00000613406 534 ntBASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CSB-PGBD3P0DP91 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 KRT223P-202ENST00000449164 1292 ntBASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 AC119751.2-201ENST00000504529 210 ntBASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 TIMM17BP1-201ENST00000545713 516 ntBASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 MIR6775-201ENST00000617557 69 ntBASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 COX11-210ENST00000639671 696 ntBASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CSB-PGBD3P0DP91 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CSB-PGBD3P0DP91 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC21.65■■□□□ 1.06
CSB-PGBD3P0DP91 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CSB-PGBD3P0DP91 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CSB-PGBD3P0DP91 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CSB-PGBD3P0DP91 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CSB-PGBD3P0DP91 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms