Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.65■□□□□ 0.26
VIMP08670 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.65■□□□□ 0.26
VIMP08670 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.65■□□□□ 0.26
VIMP08670 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
VIMP08670 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
VIMP08670 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.65■□□□□ 0.26
VIMP08670 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VIMP08670 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
VIMP08670 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.64■□□□□ 0.26
VIMP08670 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
VIMP08670 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
VIMP08670 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VIMP08670 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
VIMP08670 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.64■□□□□ 0.25
VIMP08670 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.64■□□□□ 0.25
VIMP08670 FAM220CP-201ENST00000395253 831 ntBASIC16.64■□□□□ 0.25
VIMP08670 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.64■□□□□ 0.25
VIMP08670 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.64■□□□□ 0.25
VIMP08670 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.64■□□□□ 0.25
VIMP08670 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 AC013467.2-201ENST00000605472 835 ntBASIC16.64■□□□□ 0.25
VIMP08670 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.64■□□□□ 0.25
VIMP08670 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.64■□□□□ 0.25
VIMP08670 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.64■□□□□ 0.25
VIMP08670 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.64■□□□□ 0.25
VIMP08670 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.64■□□□□ 0.25
VIMP08670 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
VIMP08670 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VIMP08670 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
VIMP08670 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC16.63■□□□□ 0.25
VIMP08670 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.63■□□□□ 0.25
VIMP08670 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 KRT8P49-201ENST00000604166 1432 ntBASIC16.63■□□□□ 0.25
VIMP08670 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VIMP08670 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VIMP08670 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VIMP08670 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VIMP08670 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.63■□□□□ 0.25
VIMP08670 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 AC003669.1-201ENST00000334569 611 ntBASIC16.63■□□□□ 0.25
VIMP08670 KLF4P1-201ENST00000412782 1185 ntBASIC16.63■□□□□ 0.25
VIMP08670 TSPY7P-201ENST00000431358 1114 ntBASIC16.63■□□□□ 0.25
VIMP08670 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.63■□□□□ 0.25
VIMP08670 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.63■□□□□ 0.25
VIMP08670 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.63■□□□□ 0.25
VIMP08670 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.63■□□□□ 0.25
VIMP08670 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.63■□□□□ 0.25
VIMP08670 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.63■□□□□ 0.25
VIMP08670 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 AC141257.4-201ENST00000634557 245 ntBASIC16.63■□□□□ 0.25
VIMP08670 AC136944.6-201ENST00000634818 245 ntBASIC16.63■□□□□ 0.25
VIMP08670 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.63■□□□□ 0.25
VIMP08670 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
VIMP08670 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VIMP08670 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.63■□□□□ 0.25
VIMP08670 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
VIMP08670 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VIMP08670 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VIMP08670 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms