Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.34■□□□□ 0.69
HLA-DOAP06340 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
HLA-DOAP06340 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.34■□□□□ 0.69
HLA-DOAP06340 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.34■□□□□ 0.69
HLA-DOAP06340 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DOAP06340 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
HLA-DOAP06340 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
HLA-DOAP06340 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HLA-DOAP06340 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
HLA-DOAP06340 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HLA-DOAP06340 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HLA-DOAP06340 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.33■□□□□ 0.69
HLA-DOAP06340 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HLA-DOAP06340 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
HLA-DOAP06340 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.33■□□□□ 0.69
HLA-DOAP06340 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
HLA-DOAP06340 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HLA-DOAP06340 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.33■□□□□ 0.69
HLA-DOAP06340 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
HLA-DOAP06340 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
HLA-DOAP06340 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DOAP06340 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DOAP06340 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DOAP06340 CENPM-206ENST00000407253 818 ntTSL 2 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DOAP06340 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 STOM-203ENST00000538954 1257 ntTSL 5 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 AL844908.2-201ENST00000609461 460 ntBASIC19.33■□□□□ 0.68
HLA-DOAP06340 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 AC005332.8-201ENST00000622750 2735 ntBASIC19.33■□□□□ 0.68
HLA-DOAP06340 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DOAP06340 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DOAP06340 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 GGT3P-204ENST00000453783 1664 ntBASIC19.33■□□□□ 0.68
HLA-DOAP06340 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.33■□□□□ 0.68
HLA-DOAP06340 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DOAP06340 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DOAP06340 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HLA-DOAP06340 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.32■□□□□ 0.68
HLA-DOAP06340 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.32■□□□□ 0.68
HLA-DOAP06340 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.32■□□□□ 0.68
HLA-DOAP06340 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC19.32■□□□□ 0.68
HLA-DOAP06340 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 REEP4-207ENST00000523293 913 ntTSL 3 BASIC19.32■□□□□ 0.68
HLA-DOAP06340 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC19.32■□□□□ 0.68
HLA-DOAP06340 AC239800.4-201ENST00000603712 296 ntBASIC19.32■□□□□ 0.68
HLA-DOAP06340 AC004233.3-201ENST00000607794 1269 ntBASIC19.32■□□□□ 0.68
HLA-DOAP06340 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.32■□□□□ 0.68
HLA-DOAP06340 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.32■□□□□ 0.68
HLA-DOAP06340 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DOAP06340 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.32■□□□□ 0.68
HLA-DOAP06340 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.31■□□□□ 0.68
HLA-DOAP06340 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
HLA-DOAP06340 RNF165-205ENST00000588679 2904 ntBASIC19.31■□□□□ 0.68
HLA-DOAP06340 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms