Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.97■□□□□ 0.63
COL2A1P02458 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.97■□□□□ 0.63
COL2A1P02458 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.97■□□□□ 0.63
COL2A1P02458 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.97■□□□□ 0.63
COL2A1P02458 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.97■□□□□ 0.63
COL2A1P02458 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL2A1P02458 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC18.96■□□□□ 0.63
COL2A1P02458 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.96■□□□□ 0.63
COL2A1P02458 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 RNF165-205ENST00000588679 2904 ntBASIC18.96■□□□□ 0.63
COL2A1P02458 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.96■□□□□ 0.63
COL2A1P02458 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 AC074338.1-201ENST00000416825 156 ntBASIC18.96■□□□□ 0.63
COL2A1P02458 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.96■□□□□ 0.63
COL2A1P02458 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.96■□□□□ 0.63
COL2A1P02458 IGHV3-71-201ENST00000523324 359 ntBASIC18.96■□□□□ 0.63
COL2A1P02458 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.96■□□□□ 0.63
COL2A1P02458 AP001282.1-201ENST00000531301 1499 ntBASIC18.96■□□□□ 0.63
COL2A1P02458 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL2A1P02458 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.96■□□□□ 0.63
COL2A1P02458 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.96■□□□□ 0.63
COL2A1P02458 WFDC1-204ENST00000613603 549 ntBASIC18.96■□□□□ 0.63
COL2A1P02458 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.96■□□□□ 0.63
COL2A1P02458 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL2A1P02458 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.95■□□□□ 0.62
COL2A1P02458 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL2A1P02458 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.95■□□□□ 0.62
COL2A1P02458 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.95■□□□□ 0.62
COL2A1P02458 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.95■□□□□ 0.62
COL2A1P02458 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
COL2A1P02458 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.95■□□□□ 0.62
COL2A1P02458 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.95■□□□□ 0.62
COL2A1P02458 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.95■□□□□ 0.62
COL2A1P02458 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.95■□□□□ 0.62
COL2A1P02458 TTTY23B-201ENST00000442790 549 ntBASIC18.95■□□□□ 0.62
COL2A1P02458 ACA64.2-201ENST00000459014 129 ntBASIC18.95■□□□□ 0.62
COL2A1P02458 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.95■□□□□ 0.62
COL2A1P02458 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.95■□□□□ 0.62
COL2A1P02458 HILS1-202ENST00000545329 423 ntBASIC18.95■□□□□ 0.62
COL2A1P02458 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.95■□□□□ 0.62
COL2A1P02458 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.95■□□□□ 0.62
COL2A1P02458 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.95■□□□□ 0.62
COL2A1P02458 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL2A1P02458 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
COL2A1P02458 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL2A1P02458 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
COL2A1P02458 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL2A1P02458 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL2A1P02458 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL2A1P02458 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL2A1P02458 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.94■□□□□ 0.62
COL2A1P02458 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
COL2A1P02458 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL2A1P02458 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL2A1P02458 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL2A1P02458 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.94■□□□□ 0.62
COL2A1P02458 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.94■□□□□ 0.62
COL2A1P02458 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
COL2A1P02458 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL2A1P02458 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL2A1P02458 AC245100.3-201ENST00000441281 285 ntBASIC18.94■□□□□ 0.62
COL2A1P02458 TIMM17BP1-201ENST00000545713 516 ntBASIC18.94■□□□□ 0.62
COL2A1P02458 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL2A1P02458 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL2A1P02458 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.94■□□□□ 0.62
COL2A1P02458 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
COL2A1P02458 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.94■□□□□ 0.62
COL2A1P02458 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.94■□□□□ 0.62
COL2A1P02458 REXO1L8P-201ENST00000604378 1897 ntBASIC18.94■□□□□ 0.62
COL2A1P02458 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL2A1P02458 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.94■□□□□ 0.62
COL2A1P02458 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL2A1P02458 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.94■□□□□ 0.62
COL2A1P02458 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.94■□□□□ 0.62
COL2A1P02458 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 ME2P1-201ENST00000426028 1970 ntBASIC18.93■□□□□ 0.62
COL2A1P02458 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL2A1P02458 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms