Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
LDB3O75112 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LDB3O75112 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LDB3O75112 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
LDB3O75112 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
LDB3O75112 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
LDB3O75112 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
LDB3O75112 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
LDB3O75112 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LDB3O75112 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.52■□□□□ 0.07
LDB3O75112 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LDB3O75112 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.52■□□□□ 0.07
LDB3O75112 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LDB3O75112 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.52■□□□□ 0.07
LDB3O75112 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
LDB3O75112 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
LDB3O75112 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 LINC01144-201ENST00000626198 1710 ntBASIC15.51■□□□□ 0.07
LDB3O75112 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
LDB3O75112 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.51■□□□□ 0.07
LDB3O75112 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.51■□□□□ 0.07
LDB3O75112 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 SPDYE11-202ENST00000450699 704 ntBASIC15.51■□□□□ 0.07
LDB3O75112 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.51■□□□□ 0.07
LDB3O75112 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 YBX1P5-201ENST00000509441 847 ntBASIC15.51■□□□□ 0.07
LDB3O75112 KRT8P48-201ENST00000515599 1220 ntBASIC15.51■□□□□ 0.07
LDB3O75112 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 SPDYE9P-201ENST00000570642 692 ntBASIC15.51■□□□□ 0.07
LDB3O75112 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.51■□□□□ 0.07
LDB3O75112 AC026120.1-201ENST00000611536 926 ntBASIC15.51■□□□□ 0.07
LDB3O75112 SPDYE10P-202ENST00000612005 668 ntBASIC15.51■□□□□ 0.07
LDB3O75112 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 SPDYE8P-202ENST00000612377 668 ntBASIC15.51■□□□□ 0.07
LDB3O75112 AC055717.3-201ENST00000622967 595 ntBASIC15.51■□□□□ 0.07
LDB3O75112 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.51■□□□□ 0.07
LDB3O75112 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.51■□□□□ 0.07
LDB3O75112 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LDB3O75112 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LDB3O75112 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.5■□□□□ 0.07
LDB3O75112 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.5■□□□□ 0.07
LDB3O75112 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 AKAP8P1-201ENST00000434743 1349 ntBASIC15.5■□□□□ 0.07
LDB3O75112 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LDB3O75112 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms