Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.44■□□□□ 0.54
MSH4O15457 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
MSH4O15457 AC106028.4-201ENST00000614509 607 ntBASIC18.44■□□□□ 0.54
MSH4O15457 MIR6080-201ENST00000617359 66 ntBASIC18.44■□□□□ 0.54
MSH4O15457 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
MSH4O15457 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.44■□□□□ 0.54
MSH4O15457 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
MSH4O15457 AL592424.1-201ENST00000563624 1536 ntBASIC18.44■□□□□ 0.54
MSH4O15457 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
MSH4O15457 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.43■□□□□ 0.54
MSH4O15457 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.43■□□□□ 0.54
MSH4O15457 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.43■□□□□ 0.54
MSH4O15457 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.43■□□□□ 0.54
MSH4O15457 AC084018.2-201ENST00000613093 2607 ntBASIC18.43■□□□□ 0.54
MSH4O15457 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.43■□□□□ 0.54
MSH4O15457 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.43■□□□□ 0.54
MSH4O15457 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
MSH4O15457 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
MSH4O15457 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.43■□□□□ 0.54
MSH4O15457 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 SPDYE7P-202ENST00000420373 878 ntBASIC18.43■□□□□ 0.54
MSH4O15457 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 CNN2P2-201ENST00000443536 909 ntBASIC18.43■□□□□ 0.54
MSH4O15457 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.43■□□□□ 0.54
MSH4O15457 CNN2P3-201ENST00000450201 906 ntBASIC18.43■□□□□ 0.54
MSH4O15457 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.43■□□□□ 0.54
MSH4O15457 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.43■□□□□ 0.54
MSH4O15457 AC051619.7-201ENST00000568314 623 ntBASIC18.43■□□□□ 0.54
MSH4O15457 AL136317.3-201ENST00000618497 906 ntBASIC18.43■□□□□ 0.54
MSH4O15457 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
MSH4O15457 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.43■□□□□ 0.54
MSH4O15457 TUBB3P1-201ENST00000405796 1332 ntBASIC18.43■□□□□ 0.54
MSH4O15457 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
MSH4O15457 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH4O15457 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
MSH4O15457 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.42■□□□□ 0.54
MSH4O15457 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH4O15457 AL662844.4-201ENST00000606367 2838 ntBASIC18.42■□□□□ 0.54
MSH4O15457 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.42■□□□□ 0.54
MSH4O15457 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.42■□□□□ 0.54
MSH4O15457 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 AC092364.2-201ENST00000596710 2692 ntBASIC18.42■□□□□ 0.54
MSH4O15457 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH4O15457 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
MSH4O15457 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.42■□□□□ 0.54
MSH4O15457 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.42■□□□□ 0.54
MSH4O15457 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.42■□□□□ 0.54
MSH4O15457 CYMP-203ENST00000474680 1263 ntBASIC18.42■□□□□ 0.54
MSH4O15457 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH4O15457 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH4O15457 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.42■□□□□ 0.54
MSH4O15457 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
MSH4O15457 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
MSH4O15457 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH4O15457 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
MSH4O15457 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH4O15457 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.42■□□□□ 0.54
MSH4O15457 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSH4O15457 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
MSH4O15457 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
MSH4O15457 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
MSH4O15457 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
MSH4O15457 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
MSH4O15457 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
MSH4O15457 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSH4O15457 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.41■□□□□ 0.54
MSH4O15457 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms