Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 MIR648-201ENST00000385046 94 ntBASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 AC108073.2-201ENST00000464002 357 ntBASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHA3Q9Y5H8 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 AL121912.1-201ENST00000603683 238 ntBASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PCDHA3Q9Y5H8 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 RPS2P28-201ENST00000314255 741 ntBASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 RNU1-129P-201ENST00000384064 167 ntBASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 HMGA1P7-201ENST00000406908 502 ntBASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 EMBP1-201ENST00000458200 901 ntBASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 AL160237.2-201ENST00000556165 472 ntBASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 U1.21-201ENST00000580816 167 ntBASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 AC021097.1-201ENST00000607902 574 ntBASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 AC126177.1-201ENST00000547829 2218 ntBASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHA3Q9Y5H8 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHA3Q9Y5H8 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms