Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 RNU1-129P-201ENST00000384064 167 ntBASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 HNRNPDP1-201ENST00000439535 754 ntBASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 U1.21-201ENST00000580816 167 ntBASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 IFNL4P1-201ENST00000607083 540 ntBASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 MIR1199-201ENST00000621445 119 ntBASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 AP002414.3-201ENST00000589352 1468 ntBASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 HMGA1P7-201ENST00000406908 502 ntBASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 MIR1224-201ENST00000408193 85 ntBASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 AC008677.1-201ENST00000519230 1561 ntBASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 AC012640.2-201ENST00000561606 901 ntBASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 AC004790.2-201ENST00000623588 572 ntBASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 AC022532.1-201ENST00000624563 1728 ntBASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
LIMA1Q9UHB6 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
LIMA1Q9UHB6 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LIMA1Q9UHB6 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
LIMA1Q9UHB6 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 AC018712.1-201ENST00000455767 687 ntBASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 AC108073.2-201ENST00000464002 357 ntBASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 AC021097.1-201ENST00000607902 574 ntBASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 TP73-AS1-207ENST00000624167 988 ntBASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMA1Q9UHB6 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms