Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LIMD1Q9UGP4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 AC079776.1-201ENST00000401540 1152 ntBASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 KRT17P8-201ENST00000540749 863 ntBASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 CHCHD2P3-201ENST00000603038 451 ntBASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 PP12613-201ENST00000424958 2230 ntBASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIMD1Q9UGP4 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 AC141586.5-201ENST00000624546 2050 ntBASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 CROCCP1-201ENST00000426910 5675 ntBASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 SPDYE19P-201ENST00000338590 713 ntBASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 AC112492.5-201ENST00000421897 457 ntBASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 RAB43P1-201ENST00000561790 589 ntBASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 AC008494.3-201ENST00000606615 944 ntBASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 SPTSSB-204ENST00000617024 1292 ntBASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 LINC00895-201ENST00000629028 1637 ntBASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIMD1Q9UGP4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms