Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 MIR6775-201ENST00000617557 69 ntBASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 AC141586.5-201ENST00000624546 2050 ntBASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 AL136982.4-201ENST00000437689 1740 ntBASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 MIR8072-201ENST00000614241 80 ntBASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC87Q9NVE4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC87Q9NVE4 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CCDC87Q9NVE4 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CCDC87Q9NVE4 AC006538.1-201ENST00000567905 1585 ntBASIC20.64■□□□□ 0.9
CCDC87Q9NVE4 CYP4F24P-201ENST00000586049 1580 ntBASIC20.64■□□□□ 0.9
CCDC87Q9NVE4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
CCDC87Q9NVE4 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 FO393414.2-201ENST00000405153 598 ntBASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 TIMM17BP1-201ENST00000545713 516 ntBASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 SNX29P1-201ENST00000548357 1007 ntBASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 AC018470.1-201ENST00000624790 3129 ntBASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC87Q9NVE4 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
CCDC87Q9NVE4 AL603756.1-201ENST00000606511 2163 ntBASIC20.63■□□□□ 0.89
CCDC87Q9NVE4 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC87Q9NVE4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC87Q9NVE4 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC87Q9NVE4 AC060834.1-201ENST00000443027 2032 ntBASIC20.63■□□□□ 0.89
CCDC87Q9NVE4 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CCDC87Q9NVE4 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC87Q9NVE4 PCGF3-213ENST00000620529 1899 ntBASIC20.63■□□□□ 0.89
CCDC87Q9NVE4 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms