Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TRIM4Q9C037 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TRIM4Q9C037 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 RNA5SP416-201ENST00000516838 111 ntBASIC16.62■□□□□ 0.25
TRIM4Q9C037 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 AC106028.4-201ENST00000614509 607 ntBASIC16.62■□□□□ 0.25
TRIM4Q9C037 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM4Q9C037 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.62■□□□□ 0.25
TRIM4Q9C037 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM4Q9C037 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 BX276092.7-203ENST00000637198 1536 ntBASIC16.61■□□□□ 0.25
TRIM4Q9C037 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 AC010460.3-201ENST00000511359 1579 ntBASIC16.61■□□□□ 0.25
TRIM4Q9C037 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 AP001269.4-201ENST00000609611 512 ntBASIC16.61■□□□□ 0.25
TRIM4Q9C037 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 AC092384.3-202ENST00000564646 2873 ntBASIC16.61■□□□□ 0.25
TRIM4Q9C037 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM4Q9C037 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM4Q9C037 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM4Q9C037 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM4Q9C037 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM4Q9C037 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM4Q9C037 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM4Q9C037 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM4Q9C037 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TRIM4Q9C037 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM4Q9C037 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
TRIM4Q9C037 AC002347.1-201ENST00000569543 541 ntBASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms