Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CCDC28BQ9BUN5 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 AC069224.1-201ENST00000566372 1715 ntBASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 MIR648-201ENST00000385046 94 ntBASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 PAWRP1-201ENST00000451083 565 ntBASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 TPSP2-201ENST00000561760 610 ntBASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 AC091167.2-201ENST00000579581 588 ntBASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 AC073347.1-201ENST00000421633 2643 ntBASIC16.11■□□□□ 0.17
CCDC28BQ9BUN5 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28BQ9BUN5 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms