Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 AC006449.6-201ENST00000612330 2296 ntBASIC12.77□□□□□ -0.36
CCDC140Q96MF4 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
CCDC140Q96MF4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 AC017007.3-201ENST00000479865 435 ntBASIC12.77□□□□□ -0.37
CCDC140Q96MF4 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC140Q96MF4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 MCCD1P2-201ENST00000423228 335 ntBASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AC004832.2-201ENST00000426397 482 ntBASIC12.76□□□□□ -0.37
CCDC140Q96MF4 FAM58CP-201ENST00000435741 640 ntBASIC12.76□□□□□ -0.37
CCDC140Q96MF4 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 PMS2P7-201ENST00000506558 1336 ntBASIC12.76□□□□□ -0.37
CCDC140Q96MF4 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AC005622.1-201ENST00000636801 1703 ntBASIC12.76□□□□□ -0.37
CCDC140Q96MF4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 BANP-204ENST00000393208 2283 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AL391005.1-201ENST00000623953 2435 ntBASIC12.76□□□□□ -0.37
CCDC140Q96MF4 AC018695.7-201ENST00000624587 2492 ntBASIC12.76□□□□□ -0.37
CCDC140Q96MF4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms