Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 AL353779.1-201ENST00000434793 351 ntBASIC16.5■□□□□ 0.23
HMGB4Q8WW32 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 RN7SL618P-201ENST00000477850 296 ntBASIC16.5■□□□□ 0.23
HMGB4Q8WW32 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 AC104794.3-201ENST00000566840 1248 ntBASIC16.5■□□□□ 0.23
HMGB4Q8WW32 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 AL359881.2-201ENST00000602973 570 ntBASIC16.5■□□□□ 0.23
HMGB4Q8WW32 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB4Q8WW32 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 API5-211ENST00000534695 560 ntTSL 5 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB4Q8WW32 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 AC138969.3-201ENST00000546612 1459 ntBASIC16.48■□□□□ 0.23
HMGB4Q8WW32 AC138932.2-201ENST00000548268 1459 ntBASIC16.48■□□□□ 0.23
HMGB4Q8WW32 AC126755.4-201ENST00000549796 1459 ntBASIC16.48■□□□□ 0.23
HMGB4Q8WW32 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms