Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.92■□□□□ 0.14
CLHC1Q8NHS4 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLHC1Q8NHS4 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.92■□□□□ 0.14
CLHC1Q8NHS4 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLHC1Q8NHS4 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLHC1Q8NHS4 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLHC1Q8NHS4 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLHC1Q8NHS4 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLHC1Q8NHS4 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLHC1Q8NHS4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CLHC1Q8NHS4 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 KRT18P27-201ENST00000427733 1299 ntBASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 KRT18P56-201ENST00000507275 550 ntBASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 AC136632.2-201ENST00000512891 861 ntBASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.91■□□□□ 0.14
CLHC1Q8NHS4 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 AC010491.1-201ENST00000563101 2797 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 AC022188.1-201ENST00000620960 1664 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 AL596257.1-201ENST00000641463 2694 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 DUSP5P1-201ENST00000441325 1139 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 RNPS1P1-201ENST00000507437 918 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 AC024909.3-201ENST00000611513 2257 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 REXO1L8P-201ENST00000604378 1897 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 AL353732.1-201ENST00000569618 1459 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 GPAA1P2-202ENST00000606848 1787 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 AL365203.3-201ENST00000609742 2057 ntBASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLHC1Q8NHS4 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLHC1Q8NHS4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.89■□□□□ 0.13
CLHC1Q8NHS4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLHC1Q8NHS4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms