Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 RPL7P3-201ENST00000441388 714 ntBASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.89■□□□□ 0.78
CCDC88AQ3V6T2 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC88AQ3V6T2 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC88AQ3V6T2 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC88AQ3V6T2 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.78
CCDC88AQ3V6T2 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 LINC01115-203ENST00000606068 577 ntBASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 AC093525.8-201ENST00000624099 1342 ntBASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC88AQ3V6T2 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 HLA-A-202ENST00000376806 1854 ntBASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 IGHJ2P-201ENST00000454480 60 ntBASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 SDHAP3-202ENST00000515467 728 ntBASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 AP001094.4-201ENST00000579008 2176 ntBASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 GPAA1P2-202ENST00000606848 1787 ntBASIC19.88■□□□□ 0.77
CCDC88AQ3V6T2 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 AC092506.1-202ENST00000401022 528 ntBASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 MEP1AP4-201ENST00000423244 1087 ntBASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 KLF2P4-201ENST00000451959 1225 ntBASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms