Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 KRT8P39-201ENST00000396270 1433 ntBASIC17.16■□□□□ 0.34
CHD9Q3L8U1 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHD9Q3L8U1 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 AC005252.2-201ENST00000624630 1141 ntBASIC17.15■□□□□ 0.34
CHD9Q3L8U1 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 AC253536.4-201ENST00000440539 267 ntBASIC17.15■□□□□ 0.34
CHD9Q3L8U1 TARDBPP1-201ENST00000442013 1203 ntBASIC17.15■□□□□ 0.34
CHD9Q3L8U1 BRI3BPP1-201ENST00000594224 787 ntBASIC17.15■□□□□ 0.34
CHD9Q3L8U1 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHD9Q3L8U1 KRT8P37-201ENST00000451609 1420 ntBASIC17.15■□□□□ 0.34
CHD9Q3L8U1 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
CHD9Q3L8U1 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
CHD9Q3L8U1 HINT2P1-201ENST00000419438 481 ntBASIC17.14■□□□□ 0.34
CHD9Q3L8U1 EEF1DP4-201ENST00000446006 880 ntBASIC17.14■□□□□ 0.34
CHD9Q3L8U1 AL591846.1-201ENST00000451736 433 ntBASIC17.14■□□□□ 0.34
CHD9Q3L8U1 AKR7A2P1-201ENST00000460134 915 ntBASIC17.14■□□□□ 0.34
CHD9Q3L8U1 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.14■□□□□ 0.34
CHD9Q3L8U1 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.14■□□□□ 0.34
CHD9Q3L8U1 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.14■□□□□ 0.34
CHD9Q3L8U1 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.14■□□□□ 0.34
CHD9Q3L8U1 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.14■□□□□ 0.34
CHD9Q3L8U1 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 GPAA1P2-202ENST00000606848 1787 ntBASIC17.14■□□□□ 0.33
CHD9Q3L8U1 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 AC079316.1-201ENST00000548397 411 ntBASIC17.14■□□□□ 0.33
CHD9Q3L8U1 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 SOCS2P1-201ENST00000417727 557 ntBASIC17.14■□□□□ 0.33
CHD9Q3L8U1 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 AL139010.1-201ENST00000454878 894 ntBASIC17.14■□□□□ 0.33
CHD9Q3L8U1 AC091804.1-201ENST00000486888 567 ntBASIC17.14■□□□□ 0.33
CHD9Q3L8U1 CLUHP6-201ENST00000580789 941 ntBASIC17.14■□□□□ 0.33
CHD9Q3L8U1 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CHD9Q3L8U1 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 INTS4P2-202ENST00000614726 2019 ntBASIC17.13■□□□□ 0.33
CHD9Q3L8U1 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 AL607033.1-201ENST00000623900 1599 ntBASIC17.13■□□□□ 0.33
CHD9Q3L8U1 AC138028.6-201ENST00000616106 1482 ntBASIC17.13■□□□□ 0.33
CHD9Q3L8U1 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 AC016694.1-201ENST00000434179 700 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms