Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 FAM58CP-201ENST00000435741 640 ntBASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 CEND1P1-201ENST00000451006 455 ntBASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AC074386.1-202ENST00000463561 864 ntBASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 YBX1P5-201ENST00000509441 847 ntBASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AL031432.2-201ENST00000566714 459 ntBASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AL928711.1-201ENST00000570165 459 ntBASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD3Q3KNS1 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 DOC2GP-204ENST00000639052 2548 ntBASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 RNU1-129P-201ENST00000384064 167 ntBASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 AP006288.1-201ENST00000446065 395 ntBASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 U1.21-201ENST00000580816 167 ntBASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 AL391005.1-201ENST00000623953 2435 ntBASIC16.15■□□□□ 0.18
PTCHD3Q3KNS1 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.14■□□□□ 0.18
PTCHD3Q3KNS1 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.14■□□□□ 0.18
PTCHD3Q3KNS1 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
PTCHD3Q3KNS1 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
PTCHD3Q3KNS1 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
PTCHD3Q3KNS1 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
PTCHD3Q3KNS1 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 PCGF3-213ENST00000620529 1899 ntBASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 ELL2P1-201ENST00000413990 1906 ntBASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD3Q3KNS1 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms