Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH6P55285 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.21■□□□□ 0.35
CDH6P55285 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH6P55285 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH6P55285 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 AC120114.3-201ENST00000611923 658 ntBASIC17.21■□□□□ 0.35
CDH6P55285 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH6P55285 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 AC008741.2-201ENST00000612792 3115 ntBASIC17.21■□□□□ 0.35
CDH6P55285 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CDH6P55285 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH6P55285 AL513523.2-202ENST00000427283 2040 ntBASIC17.21■□□□□ 0.35
CDH6P55285 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH6P55285 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CDH6P55285 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CDH6P55285 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.21■□□□□ 0.34
CDH6P55285 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.34
CDH6P55285 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDH6P55285 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDH6P55285 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.21■□□□□ 0.34
CDH6P55285 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDH6P55285 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.21■□□□□ 0.34
CDH6P55285 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.2■□□□□ 0.34
CDH6P55285 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 ZNF259P1-201ENST00000407656 1365 ntBASIC17.2■□□□□ 0.34
CDH6P55285 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CDH6P55285 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 AC007967.2-201ENST00000432613 625 ntBASIC17.2■□□□□ 0.34
CDH6P55285 POU5F1P6-201ENST00000466990 990 ntBASIC17.2■□□□□ 0.34
CDH6P55285 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.2■□□□□ 0.34
CDH6P55285 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 AC023141.13-201ENST00000604991 943 ntBASIC17.2■□□□□ 0.34
CDH6P55285 AC021097.1-201ENST00000607902 574 ntBASIC17.2■□□□□ 0.34
CDH6P55285 AC064836.3-201ENST00000607928 673 ntBASIC17.2■□□□□ 0.34
CDH6P55285 AC007064.4-201ENST00000637740 555 ntBASIC17.2■□□□□ 0.34
CDH6P55285 PCDHA1-201ENST00000378133 2726 ntBASIC17.2■□□□□ 0.34
CDH6P55285 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.2■□□□□ 0.34
CDH6P55285 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CDH6P55285 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.2■□□□□ 0.34
CDH6P55285 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH6P55285 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH6P55285 LINC02199-201ENST00000506655 2702 ntBASIC17.2■□□□□ 0.34
CDH6P55285 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CDH6P55285 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH6P55285 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH6P55285 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH6P55285 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH6P55285 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH6P55285 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CDH6P55285 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH6P55285 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CDH6P55285 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH6P55285 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH6P55285 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH6P55285 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH6P55285 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
CDH6P55285 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH6P55285 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH6P55285 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.19■□□□□ 0.34
CDH6P55285 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH6P55285 AC018845.2-201ENST00000568326 409 ntBASIC17.19■□□□□ 0.34
CDH6P55285 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CDH6P55285 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH6P55285 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH6P55285 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH6P55285 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.19■□□□□ 0.34
CDH6P55285 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CDH6P55285 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH6P55285 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH6P55285 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms