Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.26■□□□□ 0.19
LIMK1P53667 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
LIMK1P53667 AC092933.1-201ENST00000393644 945 ntBASIC16.26■□□□□ 0.19
LIMK1P53667 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.26■□□□□ 0.19
LIMK1P53667 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.26■□□□□ 0.19
LIMK1P53667 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.26■□□□□ 0.19
LIMK1P53667 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.26■□□□□ 0.19
LIMK1P53667 AC092552.1-201ENST00000547243 906 ntBASIC16.26■□□□□ 0.19
LIMK1P53667 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.26■□□□□ 0.19
LIMK1P53667 RN7SL828P-201ENST00000607615 303 ntBASIC16.26■□□□□ 0.19
LIMK1P53667 AC007431.3-201ENST00000623221 587 ntBASIC16.26■□□□□ 0.19
LIMK1P53667 AC068587.10-201ENST00000641210 219 ntBASIC16.26■□□□□ 0.19
LIMK1P53667 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.26■□□□□ 0.19
LIMK1P53667 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
LIMK1P53667 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
LIMK1P53667 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
LIMK1P53667 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LIMK1P53667 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 AL162727.3-201ENST00000635661 2787 ntBASIC16.25■□□□□ 0.19
LIMK1P53667 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 SPDYE19P-201ENST00000338590 713 ntBASIC16.25■□□□□ 0.19
LIMK1P53667 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.25■□□□□ 0.19
LIMK1P53667 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.25■□□□□ 0.19
LIMK1P53667 AC055876.2-201ENST00000531834 546 ntBASIC16.25■□□□□ 0.19
LIMK1P53667 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.25■□□□□ 0.19
LIMK1P53667 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.25■□□□□ 0.19
LIMK1P53667 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.25■□□□□ 0.19
LIMK1P53667 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.25■□□□□ 0.19
LIMK1P53667 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 MIR6787-201ENST00000616675 61 ntBASIC16.25■□□□□ 0.19
LIMK1P53667 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.25■□□□□ 0.19
LIMK1P53667 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.25■□□□□ 0.19
LIMK1P53667 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
LIMK1P53667 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.25■□□□□ 0.19
LIMK1P53667 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.25■□□□□ 0.19
LIMK1P53667 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.25■□□□□ 0.19
LIMK1P53667 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
LIMK1P53667 SLC7A15P-201ENST00000424028 1363 ntBASIC16.25■□□□□ 0.19
LIMK1P53667 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIMK1P53667 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.24■□□□□ 0.19
LIMK1P53667 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.24■□□□□ 0.19
LIMK1P53667 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.24■□□□□ 0.19
LIMK1P53667 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
LIMK1P53667 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.24■□□□□ 0.19
LIMK1P53667 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.24■□□□□ 0.19
LIMK1P53667 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.24■□□□□ 0.19
LIMK1P53667 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.24■□□□□ 0.19
LIMK1P53667 BOLA2P3-201ENST00000404566 256 ntBASIC16.24■□□□□ 0.19
LIMK1P53667 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
LIMK1P53667 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.24■□□□□ 0.19
LIMK1P53667 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC16.24■□□□□ 0.19
LIMK1P53667 MTND6P24-201ENST00000440466 518 ntBASIC16.24■□□□□ 0.19
LIMK1P53667 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.24■□□□□ 0.19
LIMK1P53667 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.24■□□□□ 0.19
LIMK1P53667 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.24■□□□□ 0.19
LIMK1P53667 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.24■□□□□ 0.19
LIMK1P53667 AC021097.1-201ENST00000607902 574 ntBASIC16.24■□□□□ 0.19
LIMK1P53667 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LIMK1P53667 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.24■□□□□ 0.19
LIMK1P53667 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 AC105020.1-201ENST00000435356 2205 ntBASIC16.24■□□□□ 0.19
LIMK1P53667 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.24■□□□□ 0.19
LIMK1P53667 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 UBALD1-205ENST00000590891 2641 ntBASIC16.24■□□□□ 0.19
LIMK1P53667 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIMK1P53667 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.24■□□□□ 0.19
LIMK1P53667 AL391005.1-201ENST00000623953 2435 ntBASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms